# TARGET T0342 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-bys-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 11 (1 Bystroff ) # The input amino acid frequencies were determined from # alignment T0342.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 3.37322 # Pos AA H E P G Y N L T D S C 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 K 0.079 0.326 0.333 0.065 0.081 0.023 0.055 0.013 0.022 0.003 0.001 2 K 0.058 0.407 0.397 0.024 0.018 0.056 0.013 0.001 0.025 0.001 0.001 3 I 0.014 0.697 0.224 0.003 0.016 0.026 0.001 0.001 0.020 0.001 0.001 4 I 0.020 0.787 0.118 0.005 0.013 0.029 0.001 0.001 0.027 0.001 0.001 5 C 0.038 0.413 0.411 0.007 0.013 0.084 0.002 0.001 0.029 0.001 0.001 6 M 0.120 0.504 0.157 0.054 0.042 0.050 0.011 0.003 0.057 0.002 0.001 7 G 0.116 0.054 0.118 0.028 0.229 0.018 0.076 0.129 0.013 0.220 0.001 8 A 0.448 0.087 0.300 0.037 0.050 0.025 0.005 0.007 0.008 0.029 0.002 9 K 0.831 0.043 0.062 0.036 0.010 0.009 0.002 0.001 0.001 0.003 0.001 10 E 0.761 0.043 0.020 0.139 0.008 0.010 0.007 0.002 0.010 0.001 0.001 11 N 0.022 0.004 0.008 0.751 0.002 0.003 0.200 0.005 0.005 0.001 0.001 12 G 0.002 0.001 0.003 0.004 0.003 0.001 0.469 0.478 0.001 0.039 0.001 13 L 0.012 0.393 0.512 0.003 0.029 0.018 0.001 0.001 0.029 0.001 0.001 14 P 0.030 0.004 0.892 0.001 0.001 0.063 0.001 0.001 0.002 0.001 0.006 15 L 0.960 0.003 0.010 0.018 0.001 0.003 0.001 0.002 0.001 0.001 0.001 16 E 0.967 0.003 0.006 0.020 0.001 0.001 0.001 0.001 0.001 0.001 0.001 17 Y 0.940 0.002 0.004 0.048 0.001 0.002 0.001 0.001 0.001 0.001 0.001 18 Q 0.981 0.002 0.005 0.008 0.001 0.002 0.001 0.001 0.001 0.001 0.001 19 E 0.976 0.004 0.005 0.011 0.001 0.001 0.001 0.001 0.001 0.001 0.001 20 K 0.944 0.002 0.003 0.047 0.001 0.001 0.001 0.001 0.001 0.001 0.001 21 L 0.821 0.025 0.056 0.079 0.003 0.007 0.003 0.001 0.004 0.001 0.001 22 K 0.892 0.018 0.024 0.044 0.004 0.004 0.010 0.001 0.002 0.001 0.001 23 A 0.701 0.071 0.071 0.113 0.023 0.008 0.005 0.003 0.004 0.001 0.001 24 I 0.363 0.208 0.191 0.169 0.010 0.022 0.002 0.001 0.033 0.001 0.001 25 E 0.056 0.157 0.410 0.001 0.022 0.026 0.031 0.001 0.287 0.007 0.001 26 P 0.441 0.004 0.380 0.035 0.001 0.024 0.001 0.001 0.001 0.001 0.115 27 N 0.092 0.082 0.141 0.298 0.061 0.115 0.128 0.029 0.050 0.004 0.001 28 D 0.232 0.095 0.116 0.324 0.044 0.043 0.099 0.015 0.026 0.006 0.001 29 Y 0.277 0.201 0.221 0.150 0.060 0.035 0.019 0.010 0.019 0.007 0.001 30 T 0.183 0.195 0.152 0.395 0.030 0.014 0.012 0.002 0.014 0.002 0.001 31 G 0.068 0.024 0.101 0.027 0.183 0.004 0.050 0.230 0.004 0.309 0.001 32 K 0.131 0.257 0.428 0.047 0.046 0.055 0.010 0.003 0.019 0.002 0.003 33 V 0.159 0.289 0.380 0.046 0.012 0.068 0.007 0.001 0.034 0.002 0.001 34 S 0.227 0.146 0.510 0.015 0.055 0.028 0.003 0.001 0.009 0.005 0.001 35 E 0.945 0.007 0.014 0.016 0.008 0.002 0.003 0.005 0.001 0.001 0.001 36 E 0.897 0.018 0.029 0.032 0.006 0.008 0.001 0.001 0.007 0.001 0.001 37 I 0.985 0.001 0.001 0.012 0.001 0.001 0.001 0.001 0.001 0.001 0.001 38 E 0.994 0.001 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 39 D 0.985 0.001 0.001 0.012 0.001 0.001 0.001 0.001 0.001 0.001 0.001 40 I 0.964 0.001 0.002 0.032 0.001 0.001 0.001 0.001 0.001 0.001 0.001 41 I 0.904 0.019 0.023 0.042 0.002 0.005 0.001 0.001 0.004 0.001 0.001 42 K 0.863 0.022 0.043 0.052 0.002 0.007 0.007 0.001 0.003 0.001 0.001 43 K 0.516 0.032 0.131 0.298 0.006 0.005 0.006 0.001 0.005 0.001 0.001 44 G 0.112 0.004 0.041 0.023 0.034 0.002 0.069 0.568 0.002 0.146 0.001 45 E 0.452 0.083 0.264 0.121 0.020 0.035 0.008 0.002 0.009 0.004 0.001 46 T 0.399 0.144 0.216 0.148 0.041 0.023 0.009 0.006 0.009 0.004 0.001 47 Q 0.370 0.192 0.200 0.114 0.046 0.030 0.015 0.003 0.028 0.002 0.001 48 T 0.266 0.270 0.269 0.097 0.025 0.036 0.006 0.001 0.027 0.001 0.001 49 L 0.251 0.229 0.277 0.099 0.044 0.049 0.013 0.004 0.029 0.005 0.001