# List of top-scoring protein chains for t2k-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2tct 207 1.29e-01 2tct a.4.1.9,a.121.1.1 16063,19240 1z6nA 167 2.82e-01 1bjz 207 3.95e-01 2tct a.4.1.9,a.121.1.1 16065,19242 1a6i 217 6.96e-01 2tct a.4.1.9,a.121.1.1 16066,19243 1pzqA 60 1.41e+00 a.34.3.1 95466 2d1eA 248 1.66e+00 1z4eA 153 2.60e+00 1ebbA 202 3.84e+00 c.60.1.1 64900 1q3eA 207 4.74e+00 b.82.3.2 95669 1h2eA 207 4.88e+00 c.60.1.1 70857 1rbp 182 5.87e+00 1aqb b.60.1.1 27085 1jvwA 167 6.34e+00 d.26.1.1 71907 1nteA 82 6.60e+00 b.36.1.1 86163 1r45A 204 6.71e+00 2utgA 70 7.98e+00 1utg a.101.1.1 18814 1id3B 102 8.11e+00 a.22.1.1 66113 1x8dA 104 8.12e+00 1od2A 805 9.48e+00 c.14.1.4,c.14.1.4 86821,86822 1r6jA 82 9.68e+00 b.36.1.1 97151 1ln4A 104 9.76e+00 d.68.4.1 74043 1utg 70 1.06e+01 1utg a.101.1.1 18813 1f07A 321 1.27e+01 1ezwA c.1.16.3 59560 1c3pA 375 1.32e+01 1c3pA c.42.1.2 32606 1frd 98 1.37e+01 1awd d.15.4.1 37648 1k6iA 352 1.44e+01 c.2.1.2 68223 1irqA 71 1.49e+01 a.43.1.4 66297 1p0kA 349 1.56e+01 c.1.4.1 87648 1f0iA 504 1.60e+01 1f0iA d.136.1.2,d.136.1.2 59566,59567 1v37A 177 1.63e+01 2eboA 74 1.64e+01 2eboA h.3.2.1 45754 2g8yA 385 1.71e+01 1k6xA 352 1.75e+01 c.2.1.2 68238 1xgkA 352 1.75e+01 1aoiB 87 1.78e+01 1aoiB a.22.1.1 16470 1aoiF 87 1.81e+01 1aoiB a.22.1.1 16471 1n6aA 259 1.86e+01 b.76.2.1,b.85.7.1 80121,80122 2aw5A 541 1.99e+01 1h8eA 510 2.03e+01 1skyB a.69.1.1,b.49.1.1,c.37.1.11 60738,60739,60740 1e79A 510 2.05e+01 1skyB a.69.1.1,b.49.1.1,c.37.1.11 18269,26434,32314 1gio 125 2.07e+01 7rsa d.5.1.1 37304 1jvr 137 2.09e+01 1jvr a.61.1.2 18132 1nbwB 117 2.12e+01 c.51.3.2 80396 1bjx 110 2.21e+01 1bjx c.47.1.2 32774 1zbmA 280 2.22e+01 2bjxA 110 2.22e+01 1bjx c.47.1.2 32776 1q5nA 454 2.27e+01 a.127.1.1 95901 2d0oB 125 2.31e+01 1dpuA 99 2.34e+01 1dpuA a.4.5.16 16150 1aj8A 371 2.34e+01 1aj8A a.103.1.1 18900 1kx5B 102 2.36e+01 a.22.1.1 77594 1or0A 160 2.41e+01 d.153.1.2 93445 1n35A 1267 2.44e+01 e.8.1.4 79935 2ck3A 510 2.46e+01 1i19A 561 2.50e+01 1i19A d.58.32.3,d.145.1.1 61522,61523 2shkA 173 2.52e+01 1shkA c.37.1.2 31934 2be3A 226 2.52e+01 1bmfA 510 2.53e+01 1skyB a.69.1.1,b.49.1.1,c.37.1.11 18281,26446,32326 1mukA 1267 2.76e+01 e.8.1.4 79492 1shkA 173 2.85e+01 1shkA c.37.1.2 31932 1cpy 421 2.97e+01 1ivyA c.69.1.5 34651 2gvkA 317 2.99e+01 1oaiA 59 3.09e+01 a.5.2.3 81255 1keaA 221 3.11e+01 a.96.1.2 68491 1tzyD 103 3.11e+01 a.22.1.1 107533 1z1dA 103 3.19e+01 1jo0A 98 3.21e+01 d.68.4.1 77140 1fm2A 169 3.23e+01 1fm2A d.153.1.2 59877 1hg3A 225 3.35e+01 1hg3A c.1.1.1 61025 1ysc 421 3.49e+01 1ivyA c.69.1.5 34652 2cyeA 133 3.53e+01 1r4gA 53 3.62e+01 a.8.5.1 96996 1n9lA 109 3.66e+01 d.110.3.6 85468 1w9gA 104 3.93e+01 1evsA 187 3.95e+01 1evsA a.26.1.1 16845 1wz7A 111 4.10e+01 1hqz1 141 4.15e+01 2f69A 261 4.28e+01 1a80 277 4.33e+01 1frb c.1.7.1 28700 1hq3D 103 4.53e+01 1aoiB a.22.1.1 16464 1n6jG 35 4.53e+01 1tafA 68 4.66e+01 1tafA a.22.1.3 16481 1zoqC 47 4.69e+01 1zz1A 369 4.75e+01 1i36A 264 4.85e+01 a.100.1.8,c.2.1.6 71108,71109 1dvh 79 4.86e+01 1c53 a.3.1.1 15802 1txoA 237 4.98e+01 1svy 114 5.11e+01 1svy d.109.1.1 40831 1c4rA 182 5.43e+01 1c4rA b.29.1.4 24229 1qjtA 99 5.46e+01 1eh2 a.39.1.6 17335 1pah 308 5.63e+01 4pah d.178.1.1 42578 1mbyA 88 5.66e+01 d.223.1.1 78931 1r1mA 164 5.71e+01 d.79.7.1 96820 1ukuA 102 5.75e+01 d.58.5.2 99533 1wdeA 294 5.75e+01 1qk9A 92 5.79e+01 1qk9A d.10.1.3 37485 4pah 308 5.84e+01 4pah d.178.1.1 42576 1dp4A 435 5.92e+01 1dp4A c.93.1.1 35710 1agi 125 5.97e+01 7rsa d.5.1.1 37303 1h3oB 76 6.01e+01 a.22.1.3 76645 1b0nA 111 6.35e+01 1b0nA a.34.1.1,a.35.1.3 17001,17064 1z2wA 192 6.40e+01 1vmjA 151 6.45e+01 1b6q 63 6.52e+01 1nkd a.30.1.1 16977 1pz1A 333 6.57e+01 c.1.7.1 95390 2fvtA 135 7.23e+01 1tag 324 7.28e+01 1cipA a.66.1.1,c.37.1.8 18197,32080 1vtp 26 7.31e+01 j.36.2.1 46284 1f3mA 80 7.45e+01 1f3mA j.66.1.1 46358 1c94A 38 7.52e+01 1c94A k.11.1.1 46428 1ur1A 378 7.53e+01 c.1.8.3 99804 1b87A 181 7.53e+01 1b87A d.108.1.1 40797 1x1gA 129 7.55e+01 1g5aA 628 7.56e+01 b.71.1.1,c.1.8.1 65152,65153 1mhyG 169 7.93e+01 1mtyG a.23.3.1 16518 1e8yA 966 7.95e+01 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19152,23187,37635,41715 1yx1A 264 7.99e+01 2f2gA 221 8.04e+01 1tadA 324 8.05e+01 1cipA a.66.1.1,c.37.1.8 18194,32077 1xeeA 91 8.12e+01 1bv1 159 8.12e+01 1bv1 d.129.3.1 41313 1ljrA 244 8.21e+01 1ljrA a.45.1.1,c.47.1.5 17707,33001 1j8uA 325 8.22e+01 d.178.1.1 71611 1zv1A 65 8.22e+01 1jw2A 72 8.30e+01 a.23.5.1 67372 1dzkA 157 8.31e+01 1obpA b.60.1.1 27096 1mqsA 671 8.53e+01 e.25.1.1 79414 5ukdA 194 8.67e+01 1zin c.37.1.1 31851 2ewrA 170 8.86e+01 2cwoA 197 8.91e+01