# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1utg 70 1.33e+00 1utg a.101.1.1 18813 2utgA 70 1.35e+00 1utg a.101.1.1 18814 1e6cA 173 1.86e+00 1shkA c.37.1.2 59296 1bpe 335 2.23e+00 1bpyA a.60.6.1,a.60.12.1,d.218.1.2 18076,75815,75816 1z6nA 167 6.51e+00 1xsvA 113 7.53e+00 1wjvA 79 7.70e+00 1yewB 247 8.02e+00 1irqA 71 1.13e+01 a.43.1.4 66297 1devB 41 1.42e+01 1devB j.64.1.1 46354 1pzqA 60 1.49e+01 a.34.3.1 95466 1pylA 97 1.56e+01 d.1.1.2 104391 1efvB 255 1.78e+01 1efvB c.26.2.3 31634 2tct 207 2.24e+01 2tct a.4.1.9,a.121.1.1 16063,19240 1o7zA 77 2.26e+01 d.9.1.1 86660 1bjz 207 2.36e+01 2tct a.4.1.9,a.121.1.1 16065,19242 1x7yA 400 2.41e+01 1vqoA 240 2.44e+01 1v1rA 400 2.50e+01 c.36.1.11 108272 1ukuA 102 2.54e+01 d.58.5.2 99533 1yzhA 214 2.60e+01 2d1eA 248 2.74e+01 1pfsA 78 2.77e+01 1pfsA b.40.4.7 25391 1jj2A 239 2.80e+01 1rl2A b.34.5.3,b.40.4.5 63084,63085 1gyxA 76 2.88e+01 d.80.1.1 76387 1c94A 38 3.11e+01 1c94A k.11.1.1 46428 1a6i 217 3.16e+01 2tct a.4.1.9,a.121.1.1 16066,19243 1tuc 63 3.24e+01 1tuc b.34.2.1 24492 1vbvA 105 3.27e+01 1f07A 321 3.38e+01 1ezwA c.1.16.3 59560 1pse 69 3.38e+01 1pse b.34.4.2 24595 1q3eA 207 3.81e+01 b.82.3.2 95669 1olsA 400 3.91e+01 c.36.1.11 93331 1shkA 173 3.95e+01 1shkA c.37.1.2 31932 1ysc 421 3.96e+01 1ivyA c.69.1.5 34652 1f0iA 504 4.08e+01 1f0iA d.136.1.2,d.136.1.2 59566,59567 2shkA 173 4.45e+01 1shkA c.37.1.2 31934 1o51A 114 4.52e+01 d.58.5.4 92480 1ckqA 276 4.71e+01 1ckqA c.52.1.1 33229 1rbp 182 4.76e+01 1aqb b.60.1.1 27085 1ivoC 53 5.04e+01 g.3.11.1 76853 2eboA 74 5.12e+01 2eboA h.3.2.1 45754 1mfs 55 5.22e+01 1mfs g.40.1.1 45167 2bapC 56 5.30e+01 1gio 125 5.40e+01 7rsa d.5.1.1 37304 1f5vA 240 5.46e+01 1bkjA d.90.1.1 40255 2bfdA 400 5.51e+01 1mhyG 169 5.79e+01 1mtyG a.23.3.1 16518 1cpy 421 5.84e+01 1ivyA c.69.1.5 34651 1lvhA 221 5.97e+01 c.108.1.6 74282 1agi 125 6.02e+01 7rsa d.5.1.1 37303 1s4bP 674 6.03e+01 d.92.1.5 105252 2h21A 440 6.05e+01 1p65A 73 6.08e+01 d.254.1.1 94156 1copD 66 6.17e+01 1orc a.35.1.2 17058 1gph1 465 6.23e+01 1ecfB 1y74A 57 6.32e+01 1cl8A 276 6.44e+01 1ckqA c.52.1.1 33230 1fjgI 128 6.65e+01 1fjfI d.14.1.1 37559 1i36A 264 6.69e+01 a.100.1.8,c.2.1.6 71108,71109 1ioj 57 6.94e+01 1ioj j.39.1.1 46293 1p0yA 444 7.00e+01 a.166.1.1,b.85.7.3 87654,87655 1t61C 227 7.13e+01 d.169.1.6,d.169.1.6 106533,106534 1mlvA 444 7.21e+01 a.166.1.1,b.85.7.3 79283,79284 1aaf 55 7.39e+01 1aaf g.40.1.1 45166 1oaiA 59 7.58e+01 a.5.2.3 81255 1qxfA 66 7.73e+01 g.41.8.4 96527 1r45A 204 7.75e+01 1eriA 276 7.78e+01 1ckqA c.52.1.1 33231 1ao0A 459 7.84e+01 1ecfB c.61.1.1,d.153.1.1 34049,41816 1mgrA 99 8.02e+01 d.1.1.2 79106 1qc9A 276 8.22e+01 1ckqA c.52.1.1 33235 1lt3A 240 8.31e+01 1lt3A d.166.1.1 42230 1n6aA 259 8.41e+01 b.76.2.1,b.85.7.1 80121,80122 1ddf 127 8.42e+01 1ddf a.77.1.2 18423 1lt4A 247 8.45e+01 1lt3A d.166.1.1 42231 2cdcA 366 8.62e+01 1frd 98 8.67e+01 1awd d.15.4.1 37648 1hnr 47 8.79e+01 1hnr a.155.1.1 17896 1ljrA 244 8.99e+01 1ljrA a.45.1.1,c.47.1.5 17707,33001