# TARGET T0342 # Using neural net t06-IDGaaH13-3-13-7-13-9-13-11-str2-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 13 (1 str2 ) # The input amino acid frequencies were determined from # alignment T0342.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 3.88164 # Pos AA A B C E G H M P Q S T Y Z 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 K 0.001 0.001 0.853 0.009 0.001 0.001 0.001 0.001 0.056 0.052 0.001 0.006 0.021 2 K 0.002 0.003 0.234 0.002 0.001 0.001 0.010 0.014 0.665 0.016 0.001 0.026 0.028 3 I 0.004 0.001 0.018 0.002 0.001 0.001 0.038 0.444 0.471 0.001 0.001 0.003 0.019 4 I 0.010 0.001 0.003 0.001 0.001 0.001 0.089 0.689 0.197 0.001 0.001 0.008 0.002 5 C 0.008 0.001 0.006 0.001 0.001 0.001 0.068 0.736 0.171 0.001 0.001 0.001 0.007 6 M 0.009 0.001 0.032 0.009 0.001 0.001 0.027 0.661 0.229 0.003 0.002 0.022 0.005 7 G 0.006 0.003 0.240 0.042 0.005 0.004 0.008 0.153 0.419 0.060 0.016 0.016 0.028 8 A 0.003 0.020 0.361 0.013 0.081 0.041 0.004 0.049 0.258 0.074 0.042 0.012 0.042 9 K 0.002 0.042 0.174 0.011 0.327 0.151 0.002 0.035 0.061 0.073 0.103 0.007 0.012 10 E 0.004 0.020 0.129 0.003 0.299 0.272 0.002 0.004 0.010 0.066 0.174 0.006 0.013 11 N 0.001 0.005 0.057 0.002 0.071 0.096 0.001 0.001 0.001 0.071 0.692 0.001 0.002 12 G 0.001 0.004 0.186 0.002 0.011 0.009 0.001 0.001 0.001 0.156 0.629 0.001 0.001 13 L 0.001 0.014 0.843 0.001 0.002 0.005 0.001 0.001 0.001 0.115 0.012 0.005 0.004 14 P 0.001 0.011 0.858 0.001 0.007 0.051 0.001 0.001 0.004 0.039 0.018 0.001 0.011 15 L 0.001 0.003 0.057 0.001 0.073 0.793 0.001 0.001 0.001 0.028 0.043 0.001 0.001 16 E 0.001 0.002 0.038 0.001 0.071 0.842 0.001 0.001 0.001 0.015 0.027 0.001 0.003 17 Y 0.001 0.001 0.009 0.001 0.037 0.938 0.001 0.001 0.001 0.003 0.010 0.001 0.002 18 Q 0.001 0.001 0.005 0.001 0.008 0.976 0.001 0.001 0.001 0.003 0.005 0.001 0.001 19 E 0.001 0.001 0.005 0.001 0.008 0.965 0.001 0.001 0.001 0.002 0.017 0.001 0.001 20 K 0.001 0.001 0.006 0.001 0.011 0.937 0.001 0.001 0.001 0.005 0.039 0.001 0.001 21 L 0.001 0.002 0.036 0.001 0.041 0.828 0.001 0.001 0.001 0.017 0.070 0.001 0.003 22 K 0.001 0.002 0.032 0.002 0.067 0.671 0.001 0.001 0.001 0.025 0.197 0.002 0.002 23 A 0.001 0.002 0.050 0.001 0.076 0.561 0.001 0.001 0.001 0.040 0.261 0.001 0.005 24 I 0.002 0.011 0.328 0.001 0.025 0.280 0.001 0.001 0.005 0.230 0.098 0.005 0.015 25 E 0.001 0.019 0.827 0.003 0.003 0.018 0.001 0.001 0.006 0.071 0.025 0.015 0.012 26 P 0.001 0.024 0.470 0.013 0.077 0.057 0.001 0.001 0.006 0.101 0.202 0.002 0.045 27 N 0.003 0.013 0.230 0.014 0.120 0.053 0.001 0.001 0.014 0.208 0.257 0.075 0.011 28 D 0.002 0.011 0.228 0.007 0.197 0.061 0.001 0.001 0.015 0.185 0.237 0.004 0.052 29 Y 0.004 0.038 0.275 0.002 0.050 0.099 0.003 0.003 0.044 0.187 0.209 0.056 0.031 30 T 0.007 0.028 0.327 0.014 0.029 0.055 0.003 0.004 0.024 0.194 0.236 0.012 0.066 31 G 0.007 0.010 0.336 0.002 0.014 0.021 0.002 0.001 0.017 0.414 0.108 0.052 0.018 32 K 0.006 0.053 0.577 0.001 0.010 0.017 0.003 0.001 0.020 0.133 0.030 0.021 0.128 33 V 0.005 0.073 0.649 0.002 0.009 0.027 0.002 0.001 0.009 0.107 0.028 0.047 0.041 34 S 0.001 0.004 0.809 0.001 0.007 0.099 0.001 0.001 0.002 0.051 0.007 0.002 0.019 35 E 0.001 0.001 0.010 0.001 0.047 0.899 0.001 0.001 0.001 0.010 0.032 0.001 0.001 36 E 0.001 0.001 0.005 0.001 0.043 0.915 0.001 0.001 0.001 0.004 0.031 0.001 0.001 37 I 0.001 0.001 0.002 0.001 0.028 0.956 0.001 0.001 0.001 0.001 0.012 0.001 0.001 38 E 0.001 0.001 0.006 0.001 0.009 0.975 0.001 0.001 0.001 0.003 0.005 0.001 0.001 39 D 0.001 0.001 0.007 0.001 0.005 0.975 0.001 0.001 0.001 0.002 0.008 0.001 0.001 40 I 0.001 0.001 0.004 0.001 0.003 0.980 0.001 0.001 0.001 0.002 0.008 0.001 0.001 41 I 0.001 0.001 0.015 0.001 0.002 0.955 0.001 0.001 0.001 0.011 0.011 0.001 0.002 42 K 0.001 0.002 0.017 0.001 0.004 0.908 0.001 0.001 0.001 0.006 0.054 0.005 0.002 43 K 0.001 0.001 0.016 0.001 0.004 0.448 0.001 0.001 0.001 0.019 0.511 0.001 0.001 44 G 0.001 0.001 0.053 0.001 0.006 0.056 0.001 0.001 0.001 0.040 0.844 0.001 0.001 45 E 0.001 0.012 0.533 0.001 0.028 0.121 0.001 0.001 0.005 0.146 0.119 0.009 0.025 46 T 0.004 0.021 0.482 0.004 0.043 0.078 0.002 0.001 0.019 0.178 0.085 0.024 0.060 47 Q 0.006 0.017 0.497 0.002 0.033 0.059 0.004 0.001 0.016 0.166 0.070 0.057 0.072 48 T 0.002 0.019 0.799 0.001 0.006 0.026 0.001 0.001 0.015 0.040 0.021 0.010 0.059 49 L 0.001 0.002 0.990 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.003