# TARGET T0342 # Using neural net t06-IDGaaH13-3-13-7-13-9-13-11-o_sep-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 20 (1 o_sep ) # The input amino acid frequencies were determined from # alignment T0342.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 3.88164 # Pos AA G H I J K L M N P Q R S T U V W A B C D 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 K 0.001 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.010 0.004 0.003 0.002 0.001 0.001 0.001 0.001 0.205 0.043 0.116 0.601 2 K 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.002 0.002 0.003 0.004 0.005 0.004 0.002 0.811 0.081 0.012 0.065 3 I 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.001 0.002 0.002 0.009 0.008 0.003 0.003 0.604 0.098 0.034 0.225 4 I 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.003 0.002 0.002 0.935 0.008 0.005 0.039 5 C 0.064 0.125 0.001 0.001 0.001 0.001 0.003 0.004 0.001 0.001 0.001 0.001 0.003 0.003 0.004 0.006 0.479 0.082 0.040 0.184 6 M 0.020 0.089 0.005 0.001 0.001 0.001 0.004 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.485 0.095 0.059 0.235 7 G 0.072 0.119 0.004 0.007 0.001 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.077 0.347 0.061 0.301 8 A 0.048 0.018 0.076 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.030 0.511 0.042 0.272 9 K 0.692 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.025 0.026 0.035 0.222 10 E 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.015 0.012 0.063 0.905 11 N 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.017 0.006 0.097 0.879 12 G 0.001 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.010 0.005 0.107 0.869 13 L 0.009 0.111 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.014 0.005 0.001 0.001 0.001 0.001 0.001 0.009 0.027 0.089 0.733 14 P 0.100 0.778 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.038 0.008 0.076 15 L 0.030 0.860 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.026 0.006 0.073 16 E 0.020 0.779 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.038 0.012 0.146 17 Y 0.023 0.841 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.013 0.031 0.008 0.081 18 Q 0.035 0.791 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.039 0.012 0.113 19 E 0.064 0.505 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.026 0.045 0.034 0.315 20 K 0.180 0.347 0.017 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.021 0.054 0.046 0.333 21 L 0.459 0.177 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.009 0.062 0.040 0.246 22 K 0.068 0.018 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.026 0.026 0.125 0.733 23 A 0.006 0.027 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.040 0.031 0.104 0.786 24 I 0.082 0.047 0.009 0.001 0.001 0.002 0.003 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.040 0.048 0.142 0.621 25 E 0.349 0.043 0.002 0.003 0.005 0.013 0.042 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.060 0.080 0.089 0.308 26 P 0.057 0.015 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.033 0.086 0.084 0.720 27 N 0.080 0.045 0.009 0.001 0.004 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.022 0.192 0.108 0.536 28 D 0.154 0.020 0.003 0.001 0.002 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.036 0.031 0.101 0.646 29 Y 0.088 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.045 0.024 0.095 0.731 30 T 0.025 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.041 0.033 0.110 0.773 31 G 0.008 0.015 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.014 0.001 0.001 0.001 0.001 0.001 0.001 0.073 0.028 0.120 0.734 32 K 0.012 0.031 0.001 0.001 0.001 0.001 0.001 0.001 0.009 0.001 0.033 0.001 0.003 0.001 0.001 0.001 0.035 0.014 0.114 0.744 33 V 0.019 0.102 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.002 0.001 0.002 0.001 0.001 0.034 0.016 0.086 0.734 34 S 0.113 0.757 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.043 0.009 0.077 35 E 0.031 0.800 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.039 0.011 0.113 36 E 0.013 0.858 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.018 0.007 0.101 37 I 0.016 0.922 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.028 0.003 0.029 38 E 0.013 0.896 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.024 0.006 0.057 39 D 0.020 0.824 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.024 0.012 0.115 40 I 0.061 0.263 0.195 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.296 0.041 0.136 41 I 0.209 0.122 0.017 0.005 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.117 0.093 0.428 42 K 0.124 0.020 0.003 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.009 0.151 0.067 0.619 43 K 0.007 0.032 0.005 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.008 0.092 0.083 0.769 44 G 0.078 0.025 0.005 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.012 0.123 0.107 0.647 45 E 0.046 0.011 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.032 0.055 0.063 0.789 46 T 0.030 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.030 0.017 0.055 0.865 47 Q 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.076 0.015 0.063 0.838 48 T 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.039 0.011 0.070 0.873 49 L 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.041 0.014 0.093 0.845