# TARGET T0342 # Using neural net t06-IDGaaH13-3-13-7-13-9-13-11-n_sep-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 20 (1 n_sep ) # The input amino acid frequencies were determined from # alignment T0342.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 3.88164 # Pos AA G H I J K L M N P Q R S T U V W A B C D 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 K 0.047 0.009 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.051 0.016 0.120 0.750 2 K 0.059 0.003 0.007 0.001 0.004 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.228 0.012 0.187 0.493 3 I 0.015 0.001 0.002 0.001 0.002 0.004 0.006 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.464 0.003 0.103 0.396 4 I 0.001 0.001 0.001 0.001 0.029 0.008 0.023 0.012 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.860 0.001 0.012 0.054 5 C 0.001 0.001 0.001 0.001 0.003 0.001 0.002 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.712 0.001 0.033 0.237 6 M 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.003 0.900 0.003 0.015 0.073 7 G 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.009 0.016 0.002 0.003 0.272 0.014 0.138 0.539 8 A 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.017 0.001 0.007 0.006 0.002 0.002 0.503 0.008 0.078 0.371 9 K 0.006 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.023 0.001 0.001 0.002 0.002 0.001 0.001 0.166 0.006 0.239 0.542 10 E 0.079 0.014 0.001 0.001 0.001 0.001 0.001 0.001 0.033 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.103 0.012 0.093 0.662 11 N 0.102 0.066 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.104 0.022 0.071 0.630 12 G 0.576 0.031 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.011 0.033 0.018 0.321 13 L 0.063 0.036 0.118 0.012 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.040 0.004 0.266 0.457 14 P 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.999 15 L 0.008 0.013 0.001 0.001 0.009 0.005 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.029 0.001 0.112 0.816 16 E 0.019 0.083 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.021 0.003 0.113 0.756 17 Y 0.121 0.281 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.016 0.008 0.094 0.476 18 Q 0.051 0.764 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.018 0.004 0.012 0.148 19 E 0.032 0.744 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.011 0.006 0.021 0.183 20 K 0.051 0.777 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.009 0.018 0.006 0.135 21 L 0.113 0.731 0.011 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.011 0.026 0.002 0.105 22 K 0.120 0.487 0.015 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.101 0.052 0.024 0.197 23 A 0.233 0.191 0.014 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.021 0.094 0.019 0.424 24 I 0.430 0.124 0.028 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.003 0.004 0.078 0.028 0.018 0.272 25 E 0.042 0.065 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.001 0.004 0.004 0.012 0.003 0.138 0.012 0.212 0.497 26 P 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.004 0.991 27 N 0.015 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.012 0.019 0.047 0.004 0.012 0.002 0.002 0.001 0.346 0.006 0.106 0.416 28 D 0.420 0.011 0.002 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.038 0.024 0.036 0.463 29 Y 0.165 0.051 0.005 0.001 0.001 0.001 0.001 0.001 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.068 0.008 0.186 0.500 30 T 0.130 0.036 0.005 0.001 0.001 0.001 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.054 0.020 0.155 0.588 31 G 0.078 0.059 0.032 0.003 0.004 0.005 0.003 0.002 0.002 0.001 0.001 0.001 0.002 0.003 0.001 0.001 0.094 0.013 0.087 0.609 32 K 0.150 0.014 0.029 0.002 0.005 0.003 0.003 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.034 0.006 0.152 0.599 33 V 0.059 0.018 0.002 0.008 0.003 0.006 0.004 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.108 0.003 0.078 0.707 34 S 0.017 0.010 0.003 0.001 0.006 0.006 0.027 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.036 0.001 0.191 0.691 35 E 0.004 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.001 0.016 0.968 36 E 0.006 0.025 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.008 0.010 0.242 0.709 37 I 0.048 0.056 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.008 0.648 0.238 38 E 0.011 0.931 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.051 39 D 0.003 0.924 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.009 0.060 40 I 0.011 0.919 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.003 0.061 41 I 0.010 0.948 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.008 0.001 0.031 42 K 0.012 0.930 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.013 0.004 0.038 43 K 0.054 0.823 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.041 0.002 0.076 44 G 0.265 0.397 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.115 0.007 0.204 45 E 0.134 0.112 0.386 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.019 0.029 0.311 46 T 0.031 0.104 0.019 0.017 0.001 0.001 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.039 0.007 0.046 0.730 47 Q 0.069 0.078 0.004 0.002 0.003 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.001 0.001 0.110 0.018 0.065 0.639 48 T 0.094 0.067 0.015 0.003 0.002 0.001 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.054 0.016 0.086 0.654 49 L 0.066 0.057 0.009 0.002 0.001 0.001 0.001 0.001 0.004 0.002 0.001 0.001 0.003 0.002 0.001 0.001 0.124 0.010 0.075 0.639