# TARGET T0342 # Using neural net t06-IDGaaH13-3-13-7-13-9-13-11-ebghstl-dssp-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 7 (1 EBGHSTL ) # The input amino acid frequencies were determined from # alignment T0342.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 3.88164 # Pos AA E B G H S T C 10N 1S 5N 5N 5N 5N 5N 5N 5N 1 K 0.013 0.001 0.001 0.001 0.002 0.001 0.984 2 K 0.695 0.007 0.002 0.001 0.007 0.005 0.282 3 I 0.965 0.003 0.001 0.001 0.001 0.001 0.029 4 I 0.988 0.001 0.001 0.001 0.001 0.001 0.009 5 C 0.957 0.002 0.001 0.006 0.004 0.001 0.029 6 M 0.701 0.004 0.001 0.010 0.034 0.011 0.239 7 G 0.218 0.003 0.002 0.004 0.160 0.023 0.589 8 A 0.126 0.025 0.139 0.148 0.110 0.172 0.279 9 K 0.069 0.008 0.225 0.200 0.098 0.282 0.118 10 E 0.052 0.024 0.231 0.141 0.105 0.391 0.056 11 N 0.010 0.005 0.018 0.036 0.057 0.856 0.019 12 G 0.006 0.003 0.009 0.004 0.180 0.618 0.180 13 L 0.016 0.024 0.001 0.001 0.069 0.003 0.886 14 P 0.024 0.035 0.002 0.007 0.008 0.002 0.922 15 L 0.006 0.002 0.077 0.844 0.011 0.031 0.030 16 E 0.002 0.001 0.069 0.891 0.004 0.022 0.010 17 Y 0.001 0.001 0.041 0.940 0.001 0.011 0.006 18 Q 0.002 0.001 0.013 0.968 0.002 0.008 0.005 19 E 0.006 0.001 0.021 0.936 0.005 0.024 0.007 20 K 0.003 0.001 0.027 0.906 0.005 0.050 0.008 21 L 0.008 0.003 0.048 0.834 0.011 0.076 0.019 22 K 0.024 0.004 0.061 0.658 0.058 0.157 0.038 23 A 0.048 0.005 0.069 0.511 0.049 0.253 0.065 24 I 0.094 0.035 0.013 0.167 0.265 0.044 0.381 25 E 0.041 0.020 0.003 0.010 0.061 0.010 0.855 26 P 0.031 0.013 0.085 0.049 0.117 0.437 0.268 27 N 0.036 0.017 0.111 0.027 0.184 0.458 0.168 28 D 0.039 0.007 0.176 0.029 0.255 0.238 0.256 29 Y 0.070 0.033 0.069 0.044 0.205 0.250 0.329 30 T 0.078 0.036 0.051 0.029 0.167 0.338 0.300 31 G 0.082 0.020 0.016 0.016 0.357 0.118 0.391 32 K 0.122 0.059 0.009 0.020 0.098 0.056 0.636 33 V 0.101 0.060 0.004 0.016 0.092 0.017 0.710 34 S 0.046 0.012 0.006 0.032 0.029 0.009 0.867 35 E 0.007 0.001 0.066 0.788 0.040 0.072 0.026 36 E 0.005 0.003 0.061 0.817 0.014 0.071 0.029 37 I 0.001 0.001 0.031 0.941 0.002 0.015 0.010 38 E 0.001 0.001 0.012 0.967 0.003 0.010 0.007 39 D 0.002 0.001 0.010 0.966 0.003 0.012 0.006 40 I 0.002 0.001 0.016 0.953 0.003 0.019 0.005 41 I 0.007 0.003 0.007 0.931 0.013 0.026 0.013 42 K 0.011 0.003 0.009 0.811 0.013 0.113 0.040 43 K 0.006 0.003 0.012 0.571 0.031 0.328 0.048 44 G 0.008 0.002 0.017 0.197 0.056 0.549 0.171 45 E 0.020 0.005 0.035 0.138 0.122 0.087 0.593 46 T 0.067 0.020 0.099 0.147 0.143 0.066 0.458 47 Q 0.084 0.016 0.073 0.097 0.161 0.155 0.414 48 T 0.034 0.015 0.012 0.020 0.011 0.026 0.882 49 L 0.002 0.001 0.001 0.001 0.001 0.001 0.996