# List of top-scoring protein chains for T0342.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1ebbA 202 1.90e+00 c.60.1.1 64900 1h2eA 207 1.97e+00 c.60.1.1 70857 1agi 125 6.83e+00 7rsa d.5.1.1 37303 1pytD 251 1.19e+01 5ptp b.47.1.2 26058 2es9A 115 1.47e+01 1utg 70 1.52e+01 1utg a.101.1.1 18813 1knwA 425 1.56e+01 b.49.2.3,c.1.6.1 90969,90970 1keaA 221 1.66e+01 a.96.1.2 68491 1r45A 204 1.77e+01 1zd1A 284 1.90e+01 1deqA 390 1.94e+01 i.9.1.1 45987 1eysL 280 2.06e+01 6prcL f.26.1.1 43515 2a22A 215 2.12e+01 1z6nA 167 2.13e+01 1zbmA 280 2.39e+01 1s1hO 65 2.42e+01 i.1.1.1 105167 1novA 355 2.64e+01 2bbvA b.121.4.4 23326 1a6zA 275 2.90e+01 1agdA b.1.1.2,d.19.1.1 20781,38280 1frd 98 2.99e+01 1awd d.15.4.1 37648 1e7oA 62 3.09e+01 b.34.2.1 83169 1mvyA 628 3.10e+01 b.71.1.1,c.1.8.1 79547,79548 1e6hA 62 3.10e+01 b.34.2.1 70084 1jgiA 628 3.12e+01 b.71.1.1,c.1.8.1 66676,66677 1g5aA 628 3.20e+01 b.71.1.1,c.1.8.1 65152,65153 1tuc 63 3.23e+01 1tuc b.34.2.1 24492 1lk5A 229 3.29e+01 c.124.1.4,d.58.40.1 73960,73961 1cpy 421 3.56e+01 1ivyA c.69.1.5 34651 1wpxA 421 3.61e+01 2bwkA 121 4.20e+01 1w8aA 192 4.64e+01 1sezA 504 4.81e+01 c.3.1.2,d.16.1.5 98822,98823 1abv 134 5.03e+01 1abv a.70.1.1 18317 1e6gA 62 5.13e+01 b.34.2.1 70083 1ee2A 373 5.14e+01 2ohxA b.35.1.2,c.2.1.1 24663,29679 1t8pA 267 5.44e+01 c.60.1.1 106667 1qlhA 374 5.45e+01 2ohxA b.35.1.2,c.2.1.1 24685,29701 1n8kA 374 5.51e+01 b.35.1.2,c.2.1.1 80298,80299 1heuA 374 5.53e+01 2ohxA b.35.1.2,c.2.1.1 60979,60980 1ju9A 374 5.54e+01 b.35.1.2,c.2.1.1 63293,63294 1qv6A 374 5.56e+01 b.35.1.2,c.2.1.1 96348,96349 1o20A 427 5.68e+01 c.82.1.1 86556 1eg7A 557 5.68e+01 1eg7A c.37.1.10 32241 1axgA 374 5.84e+01 2ohxA b.35.1.2,c.2.1.1 24691,29707 1axeA 374 5.93e+01 2ohxA b.35.1.2,c.2.1.1 24681,29697 1hd3A 62 5.94e+01 b.34.2.1 65802 1fpmA 557 5.95e+01 c.37.1.10 59945 1wwhA 119 5.95e+01 1qhhC 115 6.03e+01 1pjr 1s62A 106 6.16e+01 1mgoA 374 6.19e+01 b.35.1.2,c.2.1.1 79094,79095 1c2yA 156 6.21e+01 1rvv1 c.16.1.1 30972 1a71A 374 6.23e+01 2ohxA b.35.1.2,c.2.1.1 24673,29689 1d4dA 572 6.36e+01 1qjdA a.138.1.3,c.3.1.4,d.168.1.1 19702,30439,42322 1pwt 61 6.40e+01 1tud b.34.2.1 24490 1x38A 602 6.49e+01 1ex1A 605 6.51e+01 1ex1A c.1.8.7,c.23.11.1 29013,31347 1d4cA 572 6.70e+01 1qjdA a.138.1.3,c.3.1.4,d.168.1.1 19698,30435,42318 1negA 83 6.88e+01 b.34.2.1 80425 1u06A 62 6.91e+01 1bw3 125 7.00e+01 1bw4 b.52.1.2 26899 1p5zB 263 7.06e+01 c.37.1.1 87815 1uhcA 79 7.30e+01 b.34.2.1 99397 1el5A 389 7.33e+01 1b3mA c.3.1.2,d.16.1.3 30369,37937 1l9cA 389 7.38e+01 c.3.1.2,d.16.1.3 77815,77816 1kb9J 127 7.64e+01 b.1.1.1 77325 2dayA 128 8.04e+01 2a30A 248 8.09e+01 1w9gA 104 8.11e+01 2b3nA 159 8.14e+01 1wriA 93 8.15e+01 1eo9A 209 8.20e+01 3pchA b.3.6.1 22731 1lzlA 323 8.24e+01 c.69.1.2 78306 1ogqA 313 8.25e+01 c.10.2.8 86996 1wz7A 111 8.41e+01 1eoaA 209 8.50e+01 3pchA b.3.6.1 22732 1nbwB 117 8.50e+01 c.51.3.2 80396 1z2aA 168 8.58e+01 1tdtA 259 8.70e+01 3tdt b.81.1.2 28055 2eboA 74 8.70e+01 2eboA h.3.2.1 45754 1mwwA 128 8.72e+01 d.80.1.4 91483 2fi2A 94 8.73e+01