# List of top-scoring protein chains for t06-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1z6nA 167 1.60e-01 2tct 207 1.66e-01 2tct a.4.1.9,a.121.1.1 16063,19240 2d1eA 248 7.61e-01 1pzqA 60 9.98e-01 a.34.3.1 95466 1r45A 204 1.21e+00 1utg 70 1.72e+00 1utg a.101.1.1 18813 1h2eA 207 1.76e+00 c.60.1.1 70857 1z4eA 153 1.81e+00 2be3A 226 2.58e+00 1z1dA 103 3.15e+00 1c3pA 375 3.65e+00 1c3pA c.42.1.2 32606 1w9gA 104 4.06e+00 1keaA 221 4.69e+00 a.96.1.2 68491 1n6aA 259 5.07e+00 b.76.2.1,b.85.7.1 80121,80122 1k6iA 352 5.15e+00 c.2.1.2 68223 1xgkA 352 5.69e+00 2cyeA 133 5.95e+00 1i19A 561 6.92e+00 1i19A d.58.32.3,d.145.1.1 61522,61523 1zoqC 47 7.13e+00 1v37A 177 7.52e+00 1r6jA 82 7.60e+00 b.36.1.1 97151 1jvwA 167 7.83e+00 d.26.1.1 71907 1frd 98 7.89e+00 1awd d.15.4.1 37648 1mbyA 88 8.08e+00 d.223.1.1 78931 1aj8A 371 8.08e+00 1aj8A a.103.1.1 18900 1e5pA 151 8.42e+00 1bj7 b.60.1.1 59272 1agi 125 9.76e+00 7rsa d.5.1.1 37303 2booA 247 9.79e+00 1n35A 1267 9.88e+00 e.8.1.4 79935 1zwwA 256 1.00e+01 2gdzA 267 1.03e+01 1svy 114 1.06e+01 1svy d.109.1.1 40831 2f69A 261 1.11e+01 1irqA 71 1.12e+01 a.43.1.4 66297 1y74A 57 1.16e+01 1or0A 160 1.16e+01 d.153.1.2 93445 1q5nA 454 1.17e+01 a.127.1.1 95901 1uekA 275 1.20e+01 d.14.1.5,d.58.26.5 88483,88484 1qo7A 394 1.24e+01 1qo7A c.69.1.11 34697 2ck3A 510 1.35e+01 1z2wA 192 1.37e+01 2eboA 74 1.39e+01 2eboA h.3.2.1 45754 1ln4A 104 1.42e+01 d.68.4.1 74043 2g8yA 385 1.44e+01 1h8eA 510 1.46e+01 1skyB a.69.1.1,b.49.1.1,c.37.1.11 60738,60739,60740 2bo3A 94 1.50e+01 2d0oB 125 1.61e+01 2c07A 285 1.64e+01 1oaiA 59 1.64e+01 a.5.2.3 81255 1wmmA 145 1.67e+01 1kgsA 225 1.75e+01 a.4.6.1,c.23.1.1 68596,68597 1wpbA 172 1.86e+01 1x8dA 104 1.98e+01 1pp7U 131 2.03e+01 a.4.5.44 94973 1ogqA 313 2.08e+01 c.10.2.8 86996 1hnr 47 2.10e+01 1hnr a.155.1.1 17896 1hqz1 141 2.34e+01 1r1mA 164 2.36e+01 d.79.7.1 96820 1o82A 70 2.36e+01 a.64.2.1 92630 1h3oB 76 2.37e+01 a.22.1.3 76645 1r4gA 53 2.42e+01 a.8.5.1 96996 1i36A 264 2.43e+01 a.100.1.8,c.2.1.6 71108,71109 1x3lA 440 2.58e+01 1q3eA 207 2.70e+01 b.82.3.2 95669 2fctA 313 2.75e+01 1n6jG 35 3.00e+01 1jw2A 72 3.07e+01 a.23.5.1 67372 1f3mA 80 3.12e+01 1f3mA j.66.1.1 46358 1vmjA 151 3.13e+01 2aghC 31 3.14e+01 1zz1A 369 3.19e+01 1pylA 97 3.23e+01 d.1.1.2 104391 2fi9A 128 3.25e+01 1jtdB 273 3.27e+01 b.69.5.2 67265 1p0kA 349 3.28e+01 c.1.4.1 87648 1mpgA 282 3.29e+01 1mpgA a.96.1.3,d.129.1.2 18747,41296 2fvtA 135 3.36e+01 1e8yA 966 3.41e+01 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19152,23187,37635,41715 1c4rA 182 3.49e+01 1c4rA b.29.1.4 24229 1g5aA 628 3.61e+01 b.71.1.1,c.1.8.1 65152,65153 1ur1A 378 3.82e+01 c.1.8.3 99804 1ig8A 486 3.84e+01 2yhx c.55.1.3,c.55.1.3 64746,64747 1vj1A 363 3.86e+01 b.35.1.2,c.2.1.1 100794,100795 2b1eA 564 3.92e+01 1tadA 324 4.01e+01 1cipA a.66.1.1,c.37.1.8 18194,32077 1uj6A 227 4.34e+01 c.124.1.4,d.58.40.1 107898,107899 1xyiA 66 4.41e+01 2f6hX 419 4.43e+01 1bxyA 60 4.45e+01 1bxyA d.59.1.1 39525 2gvkA 317 4.50e+01 1zejA 293 4.58e+01 2fhzA 109 4.62e+01 2c9wA 169 4.71e+01 1dzkA 157 4.71e+01 1obpA b.60.1.1 27096 1x1oA 286 4.71e+01 1khdA 345 4.80e+01 a.46.2.1,c.27.1.1 77400,77401 1txoA 237 4.90e+01 2b18A 164 4.95e+01 1qjtA 99 5.07e+01 1eh2 a.39.1.6 17335 1vp8A 201 5.13e+01 1tq4A 413 5.16e+01 c.37.1.8 107201 2ayuA 417 5.18e+01 1wriA 93 5.19e+01 1sg7A 96 5.22e+01 2es9A 115 5.31e+01 1sfuA 75 5.48e+01 a.4.5.19 105503 1zt2B 212 5.48e+01 1u5kA 244 5.49e+01 1ej2A 181 5.49e+01 1f9aA c.26.1.3 59414 1jo0A 98 5.54e+01 d.68.4.1 77140 1fpoA 171 5.59e+01 1fpoA a.2.3.1,a.23.1.1 15693,16487 1xxlA 239 5.61e+01 1lniA 96 5.64e+01 d.1.1.2 74046 1o6dA 163 5.65e+01 c.116.1.3 92567 2bwkA 121 5.72e+01 1z7xW 461 5.77e+01 1pmzA 86 5.78e+01 a.39.1.10 104195 1yzxA 226 5.82e+01 1jm0A 50 5.91e+01 k.8.1.1 66870 1e0nA 27 5.91e+01 b.72.1.1 27807 1ay7B 89 5.93e+01 1ay7B c.9.1.1 30836 1j8uA 325 6.01e+01 d.178.1.1 71611 1v54D 147 6.05e+01 f.23.1.1 100325 1lfpA 249 6.10e+01 e.39.1.1 73885 1ygtA 111 6.18e+01 1vkkA 154 6.21e+01 d.109.1.2 108669 1x38A 602 6.24e+01 1vtp 26 6.29e+01 j.36.2.1 46284 1zgdA 312 6.32e+01 1z54A 132 6.33e+01 1csh 435 6.36e+01 1csh a.103.1.1 18880 2bj7A 138 6.38e+01 2gz4A 207 6.44e+01 1ksoA 101 6.45e+01 a.39.1.2 72926 1ukuA 102 6.45e+01 d.58.5.2 99533 1s4bP 674 6.49e+01 d.92.1.5 105252 1tafA 68 6.51e+01 1tafA a.22.1.3 16481 1xeeA 91 6.67e+01 1r7jA 95 6.76e+01 a.4.5.49 104836 2gx9A 129 6.84e+01 1pz4A 116 6.91e+01 d.106.1.1 95400 1jvr 137 6.96e+01 1jvr a.61.1.2 18132 1zx5A 300 6.98e+01 1nbaA 264 7.16e+01 1nbaA c.33.1.3 31753 1zx4A 192 7.24e+01 1fp1D 372 7.25e+01 1fpqA a.4.5.29,c.66.1.12 59939,59940 1sknP 92 7.30e+01 1sknP a.37.1.1 17127 2g84A 197 7.32e+01 1r26A 125 7.36e+01 c.47.1.1 96847 1omrA 201 7.40e+01 a.39.1.5 93349 1x9iA 302 7.43e+01 1m8jA 181 7.48e+01 c.26.1.3 84875 1sfe 180 7.50e+01 1sfe a.4.2.1,c.55.7.1 16073,33748 1s57A 153 7.53e+01 1xdwA 331 7.53e+01 2gjgA 248 7.65e+01 1e7uA 961 7.70e+01 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19147,23182,37630,41710 1jx4A 352 7.71e+01 d.240.1.1,e.8.1.7 90378,90379 1o08A 221 7.75e+01 c.108.1.6 86525 1myt 146 7.87e+01 1a6m a.1.1.2 15207 1f6yA 262 8.07e+01 1f6yA c.1.21.2 29673 1sziA 247 8.14e+01 a.24.23.1 106159 2f4mB 61 8.26e+01 1evsA 187 8.26e+01 1evsA a.26.1.1 16845 1vcc 77 8.26e+01 1vcc d.121.1.1 41092 1q1aA 289 8.29e+01 c.31.1.5 95561 2ceyA 306 8.38e+01 2f5gA 133 8.42e+01 1zrjA 50 8.45e+01 1kxpD 458 8.51e+01 a.126.1.1,a.126.1.1,a.126.1.1 73160,73161,73162 1r5eA 115 8.54e+01 1qxoA 388 8.60e+01 d.258.1.1 96539 1wraA 308 8.62e+01 1z3eB 73 8.71e+01 1j6rA 214 8.73e+01 d.173.1.2 71598 1q0uA 219 8.73e+01 c.37.1.19 95512 1aihA 170 8.74e+01 1aihA d.163.1.1 42149 1c94A 38 8.74e+01 1c94A k.11.1.1 46428 1f1mA 164 8.83e+01 1ggqA a.24.12.1 59598 2f6mA 65 8.84e+01 1awd 94 8.89e+01 1awd d.15.4.1 37673 2b8eA 273 8.97e+01 1l8wA 348 8.97e+01 a.154.1.1 73704 2blkA 122 8.98e+01