# List of top-scoring protein chains for t06-100-30-n_sep-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1uekA 275 4.45e-01 d.14.1.5,d.58.26.5 88483,88484 1tq4A 413 9.89e-01 c.37.1.8 107201 1el5A 389 1.02e+00 1b3mA c.3.1.2,d.16.1.3 30369,37937 2f6hX 419 1.06e+00 1utg 70 1.33e+00 1utg a.101.1.1 18813 1yovA 537 1.57e+00 2f6kA 307 2.00e+00 1wlmA 151 2.21e+00 2f9fA 177 2.46e+00 1xklA 273 2.88e+00 1je0A 236 3.48e+00 c.56.2.1 66581 1agi 125 3.61e+00 7rsa d.5.1.1 37303 2d1eA 248 3.66e+00 1rvgA 305 3.69e+00 c.1.10.2 97920 1z6nA 167 3.78e+00 1p5zB 263 4.00e+00 c.37.1.1 87815 1q5nA 454 4.06e+00 a.127.1.1 95901 1r45A 204 4.26e+00 1c3pA 375 4.54e+00 1c3pA c.42.1.2 32606 1mjnA 179 4.69e+00 c.62.1.1 79210 1c4rA 182 5.86e+00 1c4rA b.29.1.4 24229 1tadA 324 5.88e+00 1cipA a.66.1.1,c.37.1.8 18194,32077 1h2eA 207 6.33e+00 c.60.1.1 70857 1x8dA 104 6.65e+00 1o08A 221 6.86e+00 c.108.1.6 86525 1o0xA 262 6.94e+00 d.127.1.1 80755 2c07A 285 6.99e+00 1pmzA 86 7.21e+00 a.39.1.10 104195 1yd9A 193 7.24e+00 2fz0A 149 7.70e+00 1mxiA 160 7.73e+00 c.116.1.1 79646 1zcbA 362 7.77e+00 2avdA 219 8.12e+00 1pzqA 60 8.40e+00 a.34.3.1 95466 1hm9A 468 8.49e+00 b.81.1.4,c.68.1.5 65866,65867 1w9gA 104 8.62e+00 1z41A 338 8.66e+00 1jtdB 273 9.68e+00 b.69.5.2 67265 2be3A 226 9.68e+00 1n35A 1267 9.81e+00 e.8.1.4 79935 1z2aA 168 1.05e+01 1bouB 302 1.07e+01 1bouB c.56.6.1 33859 2ew2A 316 1.10e+01 2fi9A 128 1.11e+01 1k9uA 78 1.13e+01 a.39.1.10 84348 1n6jG 35 1.16e+01 1vqzA 341 1.17e+01 2fvtA 135 1.18e+01 1z2wA 192 1.19e+01 1khdA 345 1.25e+01 a.46.2.1,c.27.1.1 77400,77401 1r6lA 239 1.27e+01 d.14.1.4,d.101.1.1 97153,97154 1hl9A 449 1.28e+01 b.71.1.3,c.1.8.11 90650,90651 1ycdA 243 1.30e+01 1l6rA 227 1.30e+01 c.108.1.10 77768 1qu9A 128 1.31e+01 1qu9A d.79.1.1 39755 1u09A 476 1.31e+01 e.8.1.4 107545 1reqB 637 1.32e+01 1reqB c.1.19.1,c.23.6.1 29621,31248 1xrsA 516 1.32e+01 1uu1A 335 1.37e+01 c.67.1.1 99993 1hqz1 141 1.39e+01 1ehiA 377 1.43e+01 1iow c.30.1.2,d.142.1.1 31716,41484 1n6aA 259 1.45e+01 b.76.2.1,b.85.7.1 80121,80122 1k3rA 268 1.46e+01 b.40.4.10,c.116.1.2 72018,72019 1mbyA 88 1.47e+01 d.223.1.1 78931 1lc5A 364 1.54e+01 c.67.1.1 73827 1d3vA 323 1.55e+01 1d3vA c.42.1.1 32559 1e0nA 27 1.62e+01 b.72.1.1 27807 1e6cA 173 1.63e+01 1shkA c.37.1.2 59296 1ur1A 378 1.66e+01 c.1.8.3 99804 1txgA 335 1.67e+01 1g5aA 628 1.74e+01 b.71.1.1,c.1.8.1 65152,65153 1k6iA 352 1.78e+01 c.2.1.2 68223 1m7bA 184 1.80e+01 c.37.1.8 74572 2cygA 312 1.86e+01 2cyeA 133 1.90e+01 1xdwA 331 1.91e+01 1hkhA 279 1.92e+01 c.69.1.12 90628 1aj8A 371 1.93e+01 1aj8A a.103.1.1 18900 1alvA 173 1.94e+01 1alvA a.39.1.8 17370 1lucA 355 1.98e+01 1lucA c.1.16.1 29547 1svy 114 2.01e+01 1svy d.109.1.1 40831 1o5xA 248 2.01e+01 c.1.1.1 92528 1wmmA 145 2.04e+01 1cipA 353 2.09e+01 1cipA a.66.1.1,c.37.1.8 18210,32093 1rrmA 386 2.12e+01 e.22.1.2 105081 1u7gA 385 2.15e+01 f.44.1.1 107723 1xgkA 352 2.16e+01 1qo7A 394 2.18e+01 1qo7A c.69.1.11 34697 2bwkA 121 2.20e+01 2blkA 122 2.21e+01 1bvyF 191 2.21e+01 1bvyF c.23.5.1 31207 2fyxA 143 2.22e+01 1un3A 123 2.26e+01 d.5.1.1 99646 1f20A 435 2.31e+01 b.43.4.1,c.25.1.4 64932,64933 1gw5S 142 2.36e+01 d.110.4.2 70633 1wy2A 351 2.42e+01 2ae5B 528 2.43e+01 1knqA 175 2.48e+01 c.37.1.17 72786 1uhkA 191 2.48e+01 1ucpA 91 2.49e+01 a.77.1.5 99186 1ad2 228 2.54e+01 1ad2 e.24.1.1 43353 1chd 203 2.54e+01 1chd c.40.1.1 32478 1vp8A 201 2.56e+01 2gwfB 134 2.57e+01 1tz9A 367 2.59e+01 c.1.15.6 107466 1ywnA 316 2.59e+01 1qmgA 524 2.61e+01 1qmgA a.100.1.2,c.2.1.6 18785,30182 1abv 134 2.69e+01 1abv a.70.1.1 18317 1q1aA 289 2.73e+01 c.31.1.5 95561 1t4hA 290 2.75e+01 d.144.1.7 106420 1v7cA 351 2.76e+01 c.79.1.1 100446 1kwgA 645 2.77e+01 b.71.1.1,c.1.8.1,c.23.16.5 77561,77562,77563 1hnr 47 2.80e+01 1hnr a.155.1.1 17896 1inlA 296 2.86e+01 c.66.1.17 66220 2culA 232 2.87e+01 1t5bA 201 2.87e+01 c.23.5.3 106433 1s7kA 182 2.88e+01 1d7oA 297 2.88e+01 1enp c.2.1.2 29907 1q0rA 298 2.89e+01 c.69.1.28 95508 2aghC 31 2.93e+01 2bo3A 94 2.93e+01 1keaA 221 2.98e+01 a.96.1.2 68491 1b5qA 472 2.99e+01 1b37B c.3.1.2,d.16.1.5 30404,37968 1qc7A 101 3.00e+01 1qc7A a.118.14.1 18456 1izoA 417 3.01e+01 a.104.1.1 83851 1clvI 32 3.08e+01 1qfdA g.3.2.1 44075 1i6pA 220 3.09e+01 1ddzA c.53.2.1 61848 1jvwA 167 3.11e+01 d.26.1.1 71907 1v0wA 506 3.11e+01 d.136.1.2,d.136.1.2 108220,108221 1svsA 353 3.12e+01 c.37.1.8 106051 1t5oA 351 3.13e+01 c.124.1.5 106459 1o4yA 288 3.18e+01 b.29.1.2 92473 1ja9A 274 3.19e+01 c.2.1.2 62817 1wtjA 343 3.21e+01 2g8lA 299 3.26e+01 2c31A 568 3.28e+01 1vcc 77 3.34e+01 1vcc d.121.1.1 41092 1sxvA 172 3.35e+01 1f4pA 147 3.39e+01 5nul c.23.5.1 59651 1ay7B 89 3.42e+01 1ay7B c.9.1.1 30836 1m3qA 317 3.46e+01 a.96.1.3,d.129.1.2 91184,91185 1w41A 101 3.47e+01 1sviA 195 3.51e+01 c.37.1.8 106048 1zejA 293 3.51e+01 1qwgA 251 3.54e+01 c.1.27.1 96473 1fjgN 61 3.54e+01 1fjfN g.39.1.7 45154 1t9bA 677 3.54e+01 1fgkA 310 3.55e+01 1fgkA d.144.1.7 41693 1b25A 619 3.58e+01 1b25A a.110.1.1,d.152.1.1 19044,41796 1z54A 132 3.63e+01 2d28C 149 3.63e+01 1u53A 196 3.66e+01 1lk9A 448 3.68e+01 c.67.1.1 78057 1ejdA 419 3.70e+01 1uae d.68.2.2 39576 2f02A 323 3.73e+01 2ew8A 249 3.87e+01 1s9jA 341 3.90e+01 1wveC 80 3.91e+01 1gtkA 313 3.92e+01 c.94.1.1,d.50.2.1 76346,76347 1ah7 245 3.96e+01 1ah7 a.124.1.1 19339 1pmy 123 3.97e+01 1bqk b.6.1.1 22888 1qnaA 200 3.98e+01 1ytbA d.129.1.1,d.129.1.1 41226,41227 1ja1A 622 3.99e+01 1amoA b.43.4.1,c.23.5.2,c.25.1.4 62803,62804,62805 1o63A 219 4.01e+01 c.94.1.1 92540 2b3yA 888 4.02e+01 1a8q 274 4.09e+01 1brt c.69.1.12 34702 2b18A 164 4.12e+01 1whzA 70 4.14e+01 1e5mA 416 4.15e+01 1dd8A c.95.1.1,c.95.1.1 58973,58974 1tp9A 162 4.20e+01 1irqA 71 4.25e+01 a.43.1.4 66297 1zdzA 302 4.26e+01 1yj7A 171 4.27e+01 1qxoA 388 4.28e+01 d.258.1.1 96539 1ryp2 233 4.28e+01 1ryp2 1yb3A 175 4.30e+01 1qavA 90 4.35e+01 1qauA b.36.1.1 24777 2fzsA 193 4.38e+01 1am2 199 4.38e+01 1am2 b.86.1.2 28381 2b7kA 200 4.40e+01 1r6jA 82 4.41e+01 b.36.1.1 97151 2eboA 74 4.41e+01 2eboA h.3.2.1 45754 1vfvA 366 4.49e+01 c.37.1.9 108592 2gz4A 207 4.49e+01 1z3eA 132 4.53e+01 1jw2A 72 4.54e+01 a.23.5.1 67372 1zpvA 91 4.56e+01 1t8tA 271 4.58e+01 c.37.1.5 106685 1wz8A 264 4.58e+01 1sfuA 75 4.59e+01 a.4.5.19 105503 1iy8A 267 4.63e+01 c.2.1.2 83774 1cvl 319 4.63e+01 1cvl c.69.1.18 34786 1aisA 182 4.67e+01 1ytbA d.129.1.1,d.129.1.1 41288,41289 1exbA 332 4.69e+01 1qrqA c.1.7.1 28666 1vi2A 300 4.71e+01 c.2.1.7,c.58.1.5 100726,100727 2gvkA 317 4.71e+01 1s57A 153 4.72e+01 1zwwA 256 4.77e+01 1qy6A 274 4.81e+01 b.47.1.1 96574 1cojA 212 4.82e+01 1avmA a.2.11.1,d.44.1.1 15737,38734 1n9lA 109 4.86e+01 d.110.3.6 85468 2awiA 317 4.87e+01 1vetB 125 4.89e+01 d.110.7.1 108554 2es9A 115 4.92e+01 1ep3B 262 4.94e+01 1ep2B b.43.4.2,c.25.1.3 25664,31554 1oaoA 674 4.97e+01 e.26.1.2 86744 1uqrA 154 5.00e+01 c.23.13.1 99779 1xrkA 124 5.07e+01 1xhcA 367 5.12e+01 1nz6A 101 5.13e+01 a.2.3.1 86441 1bbzA 58 5.17e+01 1bbzA b.34.2.1 24477 1q3eA 207 5.21e+01 b.82.3.2 95669 2aebA 322 5.22e+01 1rkqA 282 5.26e+01 c.108.1.10 97621 2c1vA 338 5.30e+01 2cvjA 180 5.31e+01 1qjtA 99 5.34e+01 1eh2 a.39.1.6 17335 1jyrA 96 5.34e+01 d.93.1.1 71969 1qwnA 1045 5.36e+01 a.8.3.1,b.30.5.6,c.6.2.1 96487,96488,96489 1cb8A 678 5.36e+01 1cb8A a.102.3.2,b.24.1.1,b.30.5.2 18849,23898,24422 2c30A 321 5.39e+01 1gr3A 160 5.40e+01 b.22.1.1 65476 1dtdB 61 5.40e+01 1dtvA g.30.1.1 44962 1rdqE 350 5.42e+01 d.144.1.7 97314 2btiA 63 5.43e+01 1vk8A 106 5.46e+01 d.58.48.1 108636 1pmmA 466 5.47e+01 c.67.1.6 94901 1cpcA 162 5.47e+01 1cpcA a.1.1.3 15643 2c1xA 456 5.52e+01 2anuA 255 5.53e+01 1r71A 178 5.53e+01 a.4.14.1 104823 1x13A 401 5.53e+01 1f3mA 80 5.57e+01 1f3mA j.66.1.1 46358 1q0uA 219 5.60e+01 c.37.1.19 95512 1ox0A 430 5.62e+01 c.95.1.1,c.95.1.1 87495,87496 1r6wA 322 5.65e+01 c.1.11.2,d.54.1.1 97165,97166 1ln1A 214 5.68e+01 d.129.3.2 74038 7aatA 401 5.68e+01 1ajsA c.67.1.1 34250 1v37A 177 5.70e+01 1q6hA 224 5.72e+01 d.26.1.1 95975 1vj1A 363 5.77e+01 b.35.1.2,c.2.1.1 100794,100795 1mjfA 281 5.77e+01 c.66.1.17 79198 1xu9A 286 5.79e+01 2a6tA 271 5.79e+01 1pp7U 131 5.80e+01 a.4.5.44 94973 1f1mA 164 5.82e+01 1ggqA a.24.12.1 59598 1t95A 240 5.84e+01 a.5.8.1,d.235.1.2,d.58.11.3 106705,106706,106707 1rreA 200 5.88e+01 d.14.1.10 97791 1cozA 129 5.88e+01 1cozA c.26.1.2 31598 1vkkA 154 5.90e+01 d.109.1.2 108669 1na3A 91 5.92e+01 k.38.1.1 85481 1yqyA 523 5.92e+01 1or0B 528 5.94e+01 1j09A 468 5.95e+01 a.97.1.1,c.26.1.1 77025,77026 1fs5A 266 5.96e+01 c.124.1.1 65044 1o57A 291 5.97e+01 a.4.5.40,c.61.1.1 92483,92484 1xpjA 126 6.04e+01 1evsA 187 6.05e+01 1evsA a.26.1.1 16845 2ceyA 306 6.05e+01 1ud9A 245 6.08e+01 d.131.1.2,d.131.1.2 107768,107769 1xvaA 292 6.08e+01 1xvaA c.66.1.5 34183 1zd8A 227 6.09e+01 1aocA 175 6.11e+01 1aocA g.17.1.5 44817 1xx6A 191 6.11e+01 1y7yA 74 6.12e+01 2dgkA 452 6.16e+01 1d0qA 103 6.19e+01 1d0qA g.41.3.2 45208 1y81A 138 6.26e+01 1m8jA 181 6.34e+01 c.26.1.3 84875 1ze3C 205 6.37e+01 2tct 207 6.38e+01 2tct a.4.1.9,a.121.1.1 16063,19240 3dfr 162 6.44e+01 3dfr c.71.1.1 34880 1oboA 169 6.47e+01 c.23.5.1 86776 1atzA 189 6.54e+01 1atzA c.62.1.1 34132 1xfjA 261 6.55e+01 d.194.1.2 109585 1zsxA 347 6.56e+01 1lk5A 229 6.60e+01 c.124.1.4,d.58.40.1 73960,73961 1juvA 193 6.62e+01 c.71.1.1 90912 1ci9A 392 6.63e+01 e.3.1.1 64767 1nkqA 259 6.65e+01 d.177.1.1 103862 1fhoA 119 6.73e+01 1fhoA b.55.1.1 26982 1s5jA 847 6.73e+01 2ga9D 469 6.74e+01 1mf7A 194 6.76e+01 c.62.1.1 84937 1fecA 490 6.78e+01 3grs c.3.1.5,c.3.1.5,d.87.1.1 30489,30490,40176 1xaoA 121 6.79e+01 1rqwA 207 6.82e+01 b.25.1.1 97781 1mjhA 162 6.86e+01 1mjhA c.26.2.4 31639 2por 301 6.88e+01 2por f.4.3.1 43759 1ako 268 6.92e+01 1ako d.151.1.1 41779 2etvA 346 6.92e+01 1v54J 59 6.93e+01 f.23.4.1 100331 1pz4A 116 6.95e+01 d.106.1.1 95400 1xocA 520 6.96e+01 1uk8A 282 6.99e+01 c.69.1.10 107907 1qy1A 174 7.03e+01 b.60.1.1 96568 1zndA 174 7.03e+01 1n08A 163 7.08e+01 b.43.5.1 79730 1l3kA 196 7.11e+01 d.58.7.1,d.58.7.1 73539,73540 1vdc 333 7.12e+01 1trb c.3.1.5,c.3.1.5 30545,30546 1t9hA 307 7.15e+01 1x1rA 178 7.19e+01 1m9xC 146 7.23e+01 a.73.1.1 84907 1fo8A 343 7.24e+01 1foaA c.68.1.10 59927 1vbvA 105 7.24e+01 1udc 338 7.24e+01 1xel c.2.1.2 29785 1b5pA 385 7.25e+01 c.67.1.1 90403 1pinA 163 7.26e+01 1pinA b.72.1.1,d.26.1.1 27802,38431 2fhzA 109 7.27e+01 2c6qA 351 7.33e+01 1z15A 344 7.39e+01 2ajrA 331 7.40e+01 1u46A 291 7.45e+01 d.144.1.7 107656 1e5pA 151 7.45e+01 1bj7 b.60.1.1 59272 1ys1X 320 7.48e+01 2cxnA 557 7.48e+01 2cjtA 131 7.52e+01 1x7yA 400 7.52e+01 1a8s 273 7.54e+01 1brt c.69.1.12 34710 1knwA 425 7.58e+01 b.49.2.3,c.1.6.1 90969,90970 1yg6A 193 7.58e+01 1usgA 346 7.64e+01 c.93.1.1 99864 1h8bA 75 7.70e+01 a.39.1.7 60736 1no5A 114 7.77e+01 d.218.1.5 92014 1xahA 354 7.84e+01 1l3iA 192 7.85e+01 c.66.1.22 77676 2czrA 226 7.87e+01 1vk1A 242 7.87e+01 d.268.1.2 108634 1m2kA 249 7.88e+01 c.31.1.5 84754 1v2xA 194 7.93e+01 c.116.1.1 100274 1ej0A 180 7.94e+01 1ej0A c.66.1.2 34179 1f1eA 154 7.97e+01 a.22.1.2 64927 2gjsA 176 7.99e+01 1pl4A 198 8.04e+01 a.2.11.1,d.44.1.1 94854,94855 1sdsA 117 8.05e+01 d.79.3.1 105439 1wfxA 186 8.07e+01 1o82A 70 8.12e+01 a.64.2.1 92630 1xbiA 120 8.12e+01 1ctf 74 8.14e+01 1ctf d.45.1.1 38759 1zbqA 327 8.15e+01 1gmuA 143 8.15e+01 b.107.1.1,d.58.38.1 65335,65336 1sawA 225 8.16e+01 1nrvA 105 8.20e+01 d.93.1.1 86126 2b5iD 217 8.22e+01 2bfdA 400 8.23e+01 2bb6A 414 8.24e+01 1rsgA 516 8.25e+01 1h3oB 76 8.25e+01 a.22.1.3 76645 1pylA 97 8.27e+01 d.1.1.2 104391 1dljA 402 8.33e+01 1dliA a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 1uw4A 91 8.33e+01 d.58.7.4 100071 1chmA 401 8.33e+01 1chmA c.55.2.1,d.127.1.1 33545,41142 1efvA 315 8.37e+01 1efvA c.26.2.3,c.31.1.2 31633,31728 1jg1A 235 8.37e+01 c.66.1.7 66661 1z8sA 146 8.38e+01 3lynA 136 8.41e+01 1lis a.19.1.1 16413 2etjA 250 8.52e+01 2fpmA 322 8.54e+01 1zz1A 369 8.58e+01 1ug3A 339 8.58e+01 1k0iA 394 8.59e+01 c.3.1.2,d.16.1.2 67942,67943 1yfnA 118 8.65e+01 1o20A 427 8.66e+01 c.82.1.1 86556 3pmgA 561 8.67e+01 3pmgA c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 2as0A 396 8.69e+01 1musA 477 8.71e+01 c.55.3.4 79494 1hdoA 206 8.74e+01 1he2A c.2.1.2 60965 1gdvA 85 8.75e+01 1ctj a.3.1.1 60458 1qczA 169 8.76e+01 1qczA c.23.8.1 31276 1eyhA 144 8.80e+01 1eduA a.118.9.1 19214 1mzwB 31 8.84e+01 1xo7A 166 8.86e+01 1x38A 602 8.87e+01 1r9hA 135 8.87e+01 d.26.1.1 97260 1m45A 148 8.89e+01 a.39.1.5 78598 1g8iA 190 8.91e+01 1rec a.39.1.5 60363 1zmdA 474 8.93e+01 1rxwA 336 8.95e+01 a.60.7.1,c.120.1.2 98059,98060 2bmwA 304 8.95e+01 1r8sE 203 8.96e+01 a.118.3.1 97248 2fztA 79 8.98e+01