# List of top-scoring protein chains for t06-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1z6nA 167 4.08e-01 2d1eA 248 5.99e-01 2f9fA 177 6.43e-01 2f6hX 419 8.07e-01 1utg 70 1.10e+00 1utg a.101.1.1 18813 1xklA 273 1.35e+00 1qjtA 99 1.53e+00 1eh2 a.39.1.6 17335 1w9gA 104 1.73e+00 2cyeA 133 1.77e+00 1wpbA 172 2.43e+00 1pmzA 86 2.58e+00 a.39.1.10 104195 2tct 207 2.60e+00 2tct a.4.1.9,a.121.1.1 16063,19240 1h2eA 207 2.61e+00 c.60.1.1 70857 1p5zB 263 2.78e+00 c.37.1.1 87815 1je0A 236 2.98e+00 c.56.2.1 66581 1jl3A 139 3.07e+00 c.44.1.1 66826 1ci9A 392 3.32e+00 e.3.1.1 64767 2ew2A 316 3.35e+00 1zcbA 362 3.45e+00 1c3pA 375 3.57e+00 1c3pA c.42.1.2 32606 1q3eA 207 3.75e+00 b.82.3.2 95669 1hm9A 468 3.82e+00 b.81.1.4,c.68.1.5 65866,65867 1uekA 275 4.16e+00 d.14.1.5,d.58.26.5 88483,88484 1jw2A 72 4.63e+00 a.23.5.1 67372 2fi9A 128 5.15e+00 1z1dA 103 5.79e+00 1k6iA 352 5.87e+00 c.2.1.2 68223 1xgkA 352 6.41e+00 1ycdA 243 6.46e+00 1ka8A 100 6.48e+00 a.4.5.20 72241 1jf8A 131 6.69e+00 c.44.1.1 66621 1rvgA 305 6.82e+00 c.1.10.2 97920 1e6cA 173 6.92e+00 1shkA c.37.1.2 59296 1hqz1 141 6.92e+00 1tadA 324 6.93e+00 1cipA a.66.1.1,c.37.1.8 18194,32077 1u7eB 154 7.08e+00 1r45A 204 7.67e+00 1uu1A 335 7.68e+00 c.67.1.1 99993 1el5A 389 7.81e+00 1b3mA c.3.1.2,d.16.1.3 30369,37937 1ay7B 89 7.91e+00 1ay7B c.9.1.1 30836 1kg0C 136 7.92e+00 d.169.1.1 72445 1yovA 537 8.39e+00 2es9A 115 8.42e+00 1alvA 173 8.46e+00 1alvA a.39.1.8 17370 1keaA 221 8.62e+00 a.96.1.2 68491 1atzA 189 8.83e+00 1atzA c.62.1.1 34132 2c07A 285 9.56e+00 1z2aA 168 9.58e+00 1jtdB 273 9.99e+00 b.69.5.2 67265 2be3A 226 1.05e+01 1ou0A 207 1.08e+01 c.23.17.1 93536 1k9uA 78 1.09e+01 a.39.1.10 84348 1u7gA 385 1.10e+01 f.44.1.1 107723 1qmgA 524 1.12e+01 1qmgA a.100.1.2,c.2.1.6 18785,30182 1f00I 282 1.13e+01 1f00I b.1.14.1,b.1.14.1,d.169.1.3 22368,22369,42439 1whsA 255 1.13e+01 1ivyA c.69.1.5 34649 1n6aA 259 1.14e+01 b.76.2.1,b.85.7.1 80121,80122 1o0xA 262 1.19e+01 d.127.1.1 80755 2fvtA 135 1.27e+01 1fhoA 119 1.28e+01 1fhoA b.55.1.1 26982 1dp4A 435 1.33e+01 1dp4A c.93.1.1 35710 1svy 114 1.37e+01 1svy d.109.1.1 40831 1e5pA 151 1.37e+01 1bj7 b.60.1.1 59272 7aatA 401 1.40e+01 1ajsA c.67.1.1 34250 2fz0A 149 1.40e+01 1rro 108 1.43e+01 1a75A a.39.1.4 17195 1jkxA 212 1.43e+01 c.65.1.1 66813 1bouB 302 1.45e+01 1bouB c.56.6.1 33859 1qo7A 394 1.46e+01 1qo7A c.69.1.11 34697 1mxiA 160 1.50e+01 c.116.1.1 79646 2aghC 31 1.51e+01 1rwyA 109 1.52e+01 a.39.1.4 98002 1x38A 602 1.60e+01 1q5nA 454 1.63e+01 a.127.1.1 95901 1eyhA 144 1.64e+01 1eduA a.118.9.1 19214 1whzA 70 1.71e+01 1abv 134 1.76e+01 1abv a.70.1.1 18317 1zwwA 256 1.76e+01 1xo7A 166 1.80e+01 1mpgA 282 1.82e+01 1mpgA a.96.1.3,d.129.1.2 18747,41296 1knqA 175 1.82e+01 c.37.1.17 72786 1ucpA 91 1.83e+01 a.77.1.5 99186 1ogqA 313 1.85e+01 c.10.2.8 86996 1qu9A 128 1.91e+01 1qu9A d.79.1.1 39755 1aj8A 371 1.95e+01 1aj8A a.103.1.1 18900 2gs8A 317 1.96e+01 2anuA 255 2.03e+01 1f4pA 147 2.05e+01 5nul c.23.5.1 59651 1z2wA 192 2.09e+01 1pp7U 131 2.10e+01 a.4.5.44 94973 2f6kA 307 2.11e+01 2aaoA 166 2.16e+01 1ep3B 262 2.34e+01 1ep2B b.43.4.2,c.25.1.3 25664,31554 1h3oB 76 2.45e+01 a.22.1.3 76645 1nz6A 101 2.46e+01 a.2.3.1 86441 1uk8A 282 2.47e+01 c.69.1.10 107907 1a8q 274 2.49e+01 1brt c.69.1.12 34702 1efvA 315 2.50e+01 1efvA c.26.2.3,c.31.1.2 31633,31728 2eboA 74 2.53e+01 2eboA h.3.2.1 45754 1f20A 435 2.61e+01 b.43.4.1,c.25.1.4 64932,64933 1n6jG 35 2.62e+01 1tq4A 413 2.63e+01 c.37.1.8 107201 2rmcA 182 2.64e+01 2cpl b.62.1.1 27491 4cpv 109 2.64e+01 1a75A a.39.1.4 17198 5pal 109 2.64e+01 1a75A a.39.1.4 17215 1n1bA 549 2.71e+01 a.102.4.1,a.128.1.3 79799,79800 1wmmA 145 2.75e+01 1vk4A 298 2.78e+01 c.72.1.1 100850 1e8yA 966 2.85e+01 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19152,23187,37635,41715 1q0uA 219 2.88e+01 c.37.1.19 95512 1lc5A 364 2.89e+01 c.67.1.1 73827 1c4rA 182 2.90e+01 1c4rA b.29.1.4 24229 1f5vA 240 3.00e+01 1bkjA d.90.1.1 40255 1kamA 194 3.01e+01 c.26.1.3 72254 1wy3A 35 3.04e+01 1pzqA 60 3.10e+01 a.34.3.1 95466 2a5sA 284 3.10e+01 1z3eA 132 3.17e+01 1yd9A 193 3.20e+01 1hkhA 279 3.23e+01 c.69.1.12 90628 1z4eA 153 3.27e+01 1qnaA 200 3.28e+01 1ytbA d.129.1.1,d.129.1.1 41226,41227 1zoqC 47 3.37e+01 1bxyA 60 3.41e+01 1bxyA d.59.1.1 39525 1zm8A 259 3.41e+01 2c31A 568 3.43e+01 1h8bA 75 3.44e+01 a.39.1.7 60736 1ei5A 520 3.44e+01 1ei5A b.61.3.1,b.61.3.1,e.3.1.1 27418,27419,42772 2g84A 197 3.48e+01 1hl9A 449 3.49e+01 b.71.1.3,c.1.8.11 90650,90651 1mbyA 88 3.50e+01 d.223.1.1 78931 1vp8A 201 3.55e+01 1f3mA 80 3.61e+01 1f3mA j.66.1.1 46358 1m7yA 435 3.62e+01 c.67.1.4 78761 1ehiA 377 3.71e+01 1iow c.30.1.2,d.142.1.1 31716,41484 2bwkA 121 3.75e+01 1v37A 177 3.76e+01 1cmcA 104 3.76e+01 1cmbA a.43.1.5 17462 1tp9A 162 3.77e+01 1l7vA 326 3.83e+01 f.22.1.1 73672 1f1mA 164 3.84e+01 1ggqA a.24.12.1 59598 1rqwA 207 3.90e+01 b.25.1.1 97781 1ont 22 3.96e+01 j.31.1.2 46232 1e7uA 961 3.97e+01 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19147,23182,37630,41710 1lucA 355 3.97e+01 1lucA c.1.16.1 29547 1ywnA 316 4.02e+01 1wzuA 300 4.10e+01 1oaiA 59 4.13e+01 a.5.2.3 81255 1x3lA 440 4.23e+01 1ku0A 388 4.23e+01 c.69.1.18 72994 1vkmA 297 4.25e+01 c.138.1.1 108670 1zpvA 91 4.27e+01 1mjnA 179 4.32e+01 c.62.1.1 79210 1u53A 196 4.38e+01 1v63A 101 4.39e+01 a.21.1.1 108391 1ji6A 589 4.41e+01 b.18.1.3,b.77.2.1,f.1.3.1 63066,63067,63068 1qa5A 58 4.42e+01 1qa5A j.52.1.1 46335 1bvyF 191 4.42e+01 1bvyF c.23.5.1 31207 2as9A 210 4.43e+01 1wveC 80 4.46e+01 2b5iD 217 4.46e+01 1i6pA 220 4.47e+01 1ddzA c.53.2.1 61848 1pjr 724 4.49e+01 1pjr c.37.1.19,c.37.1.19 32391,32392 1bgvA 449 4.52e+01 1k89 c.2.1.7,c.58.1.1 30217,33865 1knyA 253 4.58e+01 1knyA a.24.16.1,d.218.1.1 75896,75897 1j1iA 296 4.58e+01 c.69.1.10 83977 1gdvA 85 4.68e+01 1ctj a.3.1.1 60458 1pvaA 110 4.69e+01 1a75A a.39.1.4 17207 1zi8A 236 4.69e+01 1tns 76 4.73e+01 1qpmA a.6.1.7 16228 1o2dA 371 4.82e+01 e.22.1.2 86591 1m7bA 184 4.89e+01 c.37.1.8 74572 1pwaA 162 4.92e+01 b.42.1.1 95211 1ag9A 175 4.97e+01 1rcf c.23.5.1 31178 2cygA 312 4.99e+01 1i36A 264 5.02e+01 a.100.1.8,c.2.1.6 71108,71109 1chmA 401 5.05e+01 1chmA c.55.2.1,d.127.1.1 33545,41142 1zvyA 136 5.07e+01 1xahA 354 5.09e+01 1x8dA 104 5.10e+01 1t9hA 307 5.12e+01 2az4A 429 5.19e+01 1cipA 353 5.20e+01 1cipA a.66.1.1,c.37.1.8 18210,32093 1g3mA 294 5.20e+01 c.37.1.5 83268 1ah7 245 5.23e+01 1ah7 a.124.1.1 19339 1jyrA 96 5.42e+01 d.93.1.1 71969 1q32A 544 5.43e+01 d.136.1.3,d.136.1.3 104507,104508 1jvr 137 5.44e+01 1jvr a.61.1.2 18132 1fr2B 134 5.46e+01 d.4.1.1 83257 1uhkA 191 5.47e+01 1din 236 5.48e+01 1din c.69.1.9 34682 1xu2R 47 5.55e+01 2czdA 208 5.56e+01 2ftbA 125 5.57e+01 1rp0A 284 5.58e+01 1t8tA 271 5.58e+01 c.37.1.5 106685 1z54A 132 5.62e+01 1wlmA 151 5.71e+01 1qxoA 388 5.71e+01 d.258.1.1 96539 1usrA 454 5.78e+01 b.68.1.1 99881 1svsA 353 5.80e+01 c.37.1.8 106051 1ydwA 362 5.81e+01 1f6yA 262 5.82e+01 1f6yA c.1.21.2 29673 1cpcA 162 5.83e+01 1cpcA a.1.1.3 15643 1s62A 106 5.93e+01 1irqA 71 6.04e+01 a.43.1.4 66297 2cxxA 190 6.07e+01 1ad2 228 6.09e+01 1ad2 e.24.1.1 43353 1z9tA 255 6.09e+01 1pb7A 292 6.11e+01 c.94.1.1 88025 1ql0A 241 6.15e+01 1qaeA d.4.1.2 37139 1pylA 97 6.18e+01 d.1.1.2 104391 1xx6A 191 6.26e+01 1vfvA 366 6.28e+01 c.37.1.9 108592 1e5mA 416 6.45e+01 1dd8A c.95.1.1,c.95.1.1 58973,58974 1ri5A 298 6.45e+01 c.66.1.34 97502 1brt 277 6.47e+01 1brt c.69.1.12 34699 1kyqA 274 6.53e+01 c.2.1.11,e.37.1.1 73281,73282 2cxnA 557 6.62e+01 1t46A 313 6.63e+01 d.144.1.7 106397 1chkA 238 6.64e+01 1chkA d.2.1.7 36999 1zhrA 238 6.67e+01 1h1nA 305 6.80e+01 c.1.8.3 70855 1w4xA 542 6.83e+01 c.3.1.5,c.3.1.5 109171,109172 1smxA 96 6.84e+01 b.40.4.5 105772 1irzA 64 6.86e+01 a.4.1.11 76772 1k3rA 268 6.88e+01 b.40.4.10,c.116.1.2 72018,72019 1aisA 182 6.89e+01 1ytbA d.129.1.1,d.129.1.1 41288,41289 1krs 120 6.94e+01 1krs b.40.4.1 25256 1jg1A 235 6.95e+01 c.66.1.7 66661 2avdA 219 7.01e+01 1oeyA 83 7.11e+01 d.15.2.2 92800 1fs5A 266 7.12e+01 c.124.1.1 65044 1srrA 124 7.18e+01 1dz3A c.23.1.1 31110 1i0dA 332 7.28e+01 1pscA c.1.9.3 61487 1hdoA 206 7.30e+01 1he2A c.2.1.2 60965 1v8fA 276 7.38e+01 c.26.1.4 100503 1y74A 57 7.38e+01 1u0fA 564 7.42e+01 1jvwA 167 7.45e+01 d.26.1.1 71907 1d8bA 81 7.45e+01 1d8bA a.60.8.1 18094 1s57A 153 7.50e+01 1bg6 359 7.52e+01 1bg6 a.100.1.5,c.2.1.6 18810,30214 1vqzA 341 7.54e+01 1tz9A 367 7.58e+01 c.1.15.6 107466 2b5eA 504 7.63e+01 1o5xA 248 7.65e+01 c.1.1.1 92528 1m8jA 181 7.68e+01 c.26.1.3 84875 1m6dA 214 7.69e+01 d.3.1.1 84849 1xbbA 291 7.72e+01 2g8lA 299 7.74e+01 1z85A 234 7.76e+01 1e4yA 214 7.82e+01 1zin c.37.1.1,g.41.2.1 31901,45181 2bs3C 256 7.88e+01 2ga9D 469 7.96e+01 1m45A 148 8.01e+01 a.39.1.5 78598 1reqB 637 8.04e+01 1reqB c.1.19.1,c.23.6.1 29621,31248 1z9iA 53 8.05e+01 1ugpB 226 8.07e+01 b.34.4.4 107832 1lniA 96 8.09e+01 d.1.1.2 74046 1px5A 349 8.09e+01 a.160.1.2,d.218.1.6 95277,95278 1nsj 205 8.15e+01 1nsj c.1.2.4 28560 1wphA 201 8.18e+01 2b3yA 888 8.21e+01 1jfiA 98 8.28e+01 1jfiA a.22.1.3 62936 1y80A 210 8.28e+01 1agi 125 8.31e+01 7rsa d.5.1.1 37303 2btzA 394 8.37e+01 1gotB 340 8.39e+01 1tbgA b.69.4.1 27648 1zdzA 302 8.45e+01 1cvl 319 8.53e+01 1cvl c.69.1.18 34786 1d3vA 323 8.59e+01 1d3vA c.42.1.1 32559 1zxfA 155 8.65e+01 1sjdA 368 8.73e+01 c.1.11.2,d.54.1.1 105632,105633 1qczA 169 8.74e+01 1qczA c.23.8.1 31276 1bw3 125 8.78e+01 1bw4 b.52.1.2 26899 1lycA 343 8.78e+01 a.93.1.1 74344 2c6qA 351 8.79e+01 1o08A 221 8.85e+01 c.108.1.6 86525 1d0qA 103 8.94e+01 1d0qA g.41.3.2 45208 1ej2A 181 8.96e+01 1f9aA c.26.1.3 59414