# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1utg 70 3.23e-01 1utg a.101.1.1 18813 1z6nA 167 2.58e+00 2d1eA 248 3.99e+00 2tct 207 5.15e+00 2tct a.4.1.9,a.121.1.1 16063,19240 1e6cA 173 5.22e+00 1shkA c.37.1.2 59296 1z1dA 103 6.50e+00 1agi 125 7.00e+00 7rsa d.5.1.1 37303 1yewB 247 7.56e+00 1wjvA 79 9.04e+00 1pylA 97 1.28e+01 d.1.1.2 104391 2bykB 128 1.39e+01 1h2eA 207 1.44e+01 c.60.1.1 70857 1jvwA 167 1.51e+01 d.26.1.1 71907 1hnr 47 1.52e+01 1hnr a.155.1.1 17896 1pzqA 60 1.63e+01 a.34.3.1 95466 2be3A 226 1.67e+01 1f5vA 240 1.78e+01 1bkjA d.90.1.1 40255 2booA 247 1.93e+01 1ukuA 102 2.01e+01 d.58.5.2 99533 1i36A 264 2.05e+01 a.100.1.8,c.2.1.6 71108,71109 1fhoA 119 2.24e+01 1fhoA b.55.1.1 26982 1cozA 129 2.32e+01 1cozA c.26.1.2 31598 1keaA 221 2.38e+01 a.96.1.2 68491 1uekA 275 2.40e+01 d.14.1.5,d.58.26.5 88483,88484 1irqA 71 2.54e+01 a.43.1.4 66297 1vmjA 151 2.55e+01 1g5aA 628 2.67e+01 b.71.1.1,c.1.8.1 65152,65153 2cyeA 133 2.79e+01 2f9fA 177 2.81e+01 1efvB 255 2.84e+01 1efvB c.26.2.3 31634 1whsA 255 3.02e+01 1ivyA c.69.1.5 34649 1v54D 147 3.24e+01 f.23.1.1 100325 1qo7A 394 3.26e+01 1qo7A c.69.1.11 34697 1qa5A 58 3.27e+01 1qa5A j.52.1.1 46335 1fjgI 128 3.41e+01 1fjfI d.14.1.1 37559 1frd 98 3.46e+01 1awd d.15.4.1 37648 1c94A 38 3.48e+01 1c94A k.11.1.1 46428 2ayuA 417 3.60e+01 1zoqC 47 3.68e+01 1e5pA 151 3.75e+01 1bj7 b.60.1.1 59272 1xsvA 113 3.84e+01 1uj6A 227 4.02e+01 c.124.1.4,d.58.40.1 107898,107899 1c3pA 375 4.45e+01 1c3pA c.42.1.2 32606 1hh1A 143 4.53e+01 1gefA c.52.1.18 61036 1sfe 180 4.58e+01 1sfe a.4.2.1,c.55.7.1 16073,33748 1ww7A 160 4.66e+01 1ktbA 405 4.81e+01 b.71.1.1,c.1.8.1 72960,72961 1ucpA 91 4.85e+01 a.77.1.5 99186 1vbvA 105 4.94e+01 1pfsA 78 5.29e+01 1pfsA b.40.4.7 25391 2b4nA 42 5.55e+01 1jw2A 72 5.56e+01 a.23.5.1 67372 1nb8A 353 5.67e+01 d.3.1.9 80385 1pp7U 131 5.69e+01 a.4.5.44 94973 1qb2A 109 5.76e+01 1qb2A a.36.1.1 17125 2eboA 74 5.86e+01 2eboA h.3.2.1 45754 1x1nA 524 5.96e+01 1xpjA 126 5.96e+01 1wz8A 264 6.06e+01 1mgrA 99 6.19e+01 d.1.1.2 79106 1n6aA 259 6.34e+01 b.76.2.1,b.85.7.1 80121,80122 1z4eA 153 6.48e+01 1lmmA 40 6.65e+01 g.3.6.2 91080 1pz1A 333 6.69e+01 c.1.7.1 95390 1o82A 70 6.97e+01 a.64.2.1 92630 2bwkA 121 6.97e+01 1q60A 99 7.05e+01 1devB 41 7.12e+01 1devB j.64.1.1 46354 1aj8A 371 7.24e+01 1aj8A a.103.1.1 18900 1r6jA 82 7.24e+01 b.36.1.1 97151 1g0sA 209 7.27e+01 1g0sA d.113.1.1 60187 1r8eA 278 7.31e+01 a.6.1.3,d.60.1.1 104843,104844 2gm5A 139 7.37e+01 1s4bP 674 7.41e+01 d.92.1.5 105252 1zmeC 70 7.46e+01 1zmeC g.38.1.1,h.1.3.1 45081,45514 1xgkA 352 7.50e+01 1xawA 140 7.51e+01 1wpaA 114 7.53e+01 1k6iA 352 7.56e+01 c.2.1.2 68223 1pytA 94 7.62e+01 1pytA d.58.3.1 39064 1v37A 177 7.72e+01 1vi2A 300 7.78e+01 c.2.1.7,c.58.1.5 100726,100727 1oaiA 59 7.84e+01 a.5.2.3 81255 1k4zA 159 7.95e+01 b.80.5.1 72070 1y74A 57 7.96e+01 1dgfA 497 8.09e+01 1cf9A e.5.1.1 42782 1hl9A 449 8.19e+01 b.71.1.3,c.1.8.11 90650,90651 2d0oB 125 8.22e+01 1w9gA 104 8.25e+01 1lniA 96 8.39e+01 d.1.1.2 74046 1r7jA 95 8.58e+01 a.4.5.49 104836 2aghC 31 8.65e+01 1klxA 138 8.67e+01 a.118.18.1 77440 1yliA 153 8.68e+01 1xxlA 239 8.74e+01 1jvr 137 8.80e+01 1jvr a.61.1.2 18132 1k0mA 241 8.81e+01 a.45.1.1,c.47.1.5 67949,67950 2b3wA 168 8.93e+01