# TARGET T0342 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-str2-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 13 (1 str2 ) # The input amino acid frequencies were determined from # alignment T0342.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 3.73689 # Pos AA A B C E G H M P Q S T Y Z 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 K 0.001 0.004 0.676 0.011 0.001 0.001 0.002 0.001 0.047 0.216 0.005 0.016 0.020 2 K 0.005 0.009 0.308 0.014 0.001 0.001 0.022 0.033 0.473 0.054 0.001 0.026 0.054 3 I 0.013 0.004 0.025 0.003 0.001 0.001 0.061 0.433 0.425 0.002 0.001 0.012 0.021 4 I 0.015 0.001 0.005 0.002 0.001 0.001 0.078 0.660 0.228 0.001 0.001 0.007 0.004 5 C 0.016 0.001 0.014 0.002 0.001 0.002 0.095 0.690 0.169 0.001 0.001 0.003 0.007 6 M 0.006 0.002 0.049 0.006 0.001 0.003 0.036 0.593 0.253 0.010 0.008 0.021 0.011 7 G 0.002 0.006 0.322 0.091 0.005 0.005 0.004 0.092 0.261 0.122 0.054 0.015 0.022 8 A 0.003 0.035 0.299 0.013 0.150 0.065 0.002 0.036 0.121 0.145 0.080 0.013 0.038 9 K 0.003 0.015 0.108 0.004 0.410 0.155 0.001 0.011 0.020 0.095 0.161 0.006 0.010 10 E 0.001 0.015 0.094 0.002 0.389 0.191 0.001 0.003 0.006 0.073 0.218 0.002 0.004 11 N 0.001 0.005 0.067 0.001 0.073 0.069 0.001 0.001 0.002 0.070 0.709 0.001 0.001 12 G 0.001 0.007 0.220 0.001 0.017 0.021 0.001 0.001 0.001 0.168 0.563 0.001 0.001 13 L 0.001 0.026 0.738 0.001 0.003 0.013 0.001 0.001 0.001 0.193 0.018 0.006 0.002 14 P 0.001 0.018 0.737 0.001 0.007 0.099 0.001 0.001 0.003 0.081 0.035 0.001 0.019 15 L 0.001 0.001 0.032 0.001 0.026 0.890 0.001 0.001 0.001 0.018 0.032 0.001 0.001 16 E 0.001 0.002 0.020 0.001 0.025 0.927 0.001 0.001 0.001 0.009 0.015 0.001 0.001 17 Y 0.001 0.001 0.004 0.001 0.010 0.975 0.001 0.001 0.001 0.002 0.008 0.001 0.001 18 Q 0.001 0.001 0.003 0.001 0.005 0.987 0.001 0.001 0.001 0.001 0.003 0.001 0.001 19 E 0.001 0.001 0.004 0.001 0.007 0.979 0.001 0.001 0.001 0.001 0.007 0.001 0.001 20 K 0.001 0.001 0.004 0.001 0.009 0.963 0.001 0.001 0.001 0.002 0.021 0.001 0.001 21 L 0.001 0.001 0.034 0.001 0.025 0.885 0.001 0.001 0.001 0.012 0.041 0.001 0.001 22 K 0.001 0.002 0.020 0.001 0.062 0.716 0.001 0.001 0.001 0.012 0.184 0.001 0.001 23 A 0.001 0.002 0.033 0.001 0.075 0.523 0.001 0.001 0.001 0.038 0.324 0.001 0.003 24 I 0.001 0.016 0.301 0.001 0.026 0.285 0.001 0.001 0.003 0.291 0.067 0.003 0.005 25 E 0.001 0.011 0.807 0.001 0.003 0.015 0.001 0.001 0.003 0.134 0.014 0.008 0.003 26 P 0.001 0.027 0.396 0.004 0.070 0.065 0.001 0.001 0.005 0.089 0.316 0.001 0.026 27 N 0.001 0.019 0.204 0.007 0.081 0.036 0.001 0.001 0.006 0.180 0.430 0.029 0.005 28 D 0.002 0.022 0.290 0.008 0.125 0.031 0.001 0.001 0.007 0.197 0.280 0.004 0.031 29 Y 0.003 0.045 0.382 0.002 0.043 0.057 0.002 0.001 0.021 0.216 0.166 0.040 0.024 30 T 0.004 0.024 0.276 0.013 0.045 0.039 0.002 0.002 0.008 0.166 0.375 0.009 0.037 31 G 0.003 0.012 0.310 0.002 0.017 0.015 0.001 0.001 0.010 0.445 0.145 0.025 0.016 32 K 0.003 0.052 0.716 0.001 0.007 0.010 0.001 0.001 0.008 0.083 0.034 0.020 0.065 33 V 0.001 0.044 0.852 0.001 0.002 0.005 0.001 0.001 0.002 0.065 0.009 0.008 0.012 34 S 0.001 0.003 0.908 0.001 0.004 0.035 0.001 0.001 0.001 0.038 0.005 0.001 0.005 35 E 0.001 0.001 0.004 0.001 0.037 0.931 0.001 0.001 0.001 0.004 0.023 0.001 0.001 36 E 0.001 0.001 0.002 0.001 0.030 0.953 0.001 0.001 0.001 0.001 0.012 0.001 0.001 37 I 0.001 0.001 0.002 0.001 0.018 0.974 0.001 0.001 0.001 0.001 0.006 0.001 0.001 38 E 0.001 0.001 0.002 0.001 0.003 0.992 0.001 0.001 0.001 0.001 0.001 0.001 0.001 39 D 0.001 0.001 0.002 0.001 0.002 0.991 0.001 0.001 0.001 0.001 0.003 0.001 0.001 40 I 0.001 0.001 0.001 0.001 0.004 0.988 0.001 0.001 0.001 0.001 0.006 0.001 0.001 41 I 0.001 0.001 0.007 0.001 0.003 0.972 0.001 0.001 0.001 0.007 0.009 0.001 0.001 42 K 0.001 0.003 0.017 0.001 0.007 0.915 0.001 0.001 0.001 0.007 0.048 0.002 0.001 43 K 0.001 0.001 0.013 0.001 0.005 0.561 0.001 0.001 0.001 0.013 0.406 0.001 0.001 44 G 0.001 0.002 0.120 0.001 0.010 0.159 0.001 0.001 0.001 0.044 0.663 0.001 0.001 45 E 0.001 0.008 0.633 0.001 0.040 0.133 0.001 0.001 0.002 0.090 0.069 0.003 0.021 46 T 0.002 0.022 0.428 0.010 0.063 0.146 0.001 0.001 0.006 0.162 0.100 0.028 0.032 47 Q 0.002 0.018 0.490 0.002 0.045 0.095 0.001 0.001 0.010 0.162 0.095 0.047 0.031 48 T 0.001 0.013 0.844 0.001 0.004 0.023 0.001 0.001 0.005 0.051 0.025 0.004 0.029 49 L 0.001 0.004 0.971 0.001 0.001 0.002 0.001 0.001 0.001 0.015 0.002 0.003 0.001