# TARGET T0342 # Using neural net t06-IDGaaH13-3-13-7-13-9-13-11-o_sep-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 20 (1 o_sep ) # The input amino acid frequencies were determined from # alignment T0342.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 3.73689 # Pos AA G H I J K L M N P Q R S T U V W A B C D 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 K 0.001 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.011 0.004 0.003 0.002 0.001 0.001 0.001 0.001 0.205 0.043 0.116 0.602 2 K 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.002 0.002 0.003 0.004 0.005 0.004 0.002 0.811 0.080 0.012 0.065 3 I 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.001 0.002 0.002 0.009 0.008 0.003 0.003 0.604 0.098 0.034 0.224 4 I 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.003 0.002 0.002 0.935 0.008 0.005 0.039 5 C 0.063 0.120 0.001 0.001 0.001 0.001 0.003 0.004 0.001 0.001 0.001 0.001 0.003 0.003 0.004 0.006 0.486 0.080 0.040 0.184 6 M 0.020 0.087 0.005 0.001 0.001 0.001 0.004 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.489 0.094 0.059 0.234 7 G 0.071 0.116 0.004 0.007 0.001 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.079 0.346 0.062 0.303 8 A 0.048 0.018 0.076 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.031 0.503 0.043 0.278 9 K 0.687 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.026 0.026 0.036 0.225 10 E 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.015 0.013 0.064 0.904 11 N 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.018 0.006 0.097 0.879 12 G 0.001 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.010 0.005 0.106 0.869 13 L 0.010 0.111 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.015 0.005 0.001 0.001 0.001 0.001 0.001 0.009 0.027 0.090 0.730 14 P 0.101 0.772 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.038 0.009 0.079 15 L 0.031 0.856 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.002 0.026 0.006 0.076 16 E 0.021 0.776 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.038 0.012 0.147 17 Y 0.024 0.838 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.013 0.031 0.008 0.083 18 Q 0.036 0.787 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.039 0.012 0.115 19 E 0.065 0.499 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.027 0.045 0.034 0.318 20 K 0.181 0.342 0.017 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.021 0.054 0.046 0.336 21 L 0.459 0.175 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.009 0.062 0.040 0.248 22 K 0.067 0.017 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.026 0.026 0.125 0.733 23 A 0.006 0.026 0.002 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.041 0.030 0.104 0.786 24 I 0.080 0.046 0.009 0.001 0.001 0.002 0.003 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.041 0.048 0.143 0.622 25 E 0.349 0.042 0.002 0.003 0.005 0.013 0.043 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.060 0.080 0.089 0.308 26 P 0.057 0.015 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.033 0.085 0.084 0.722 27 N 0.080 0.045 0.009 0.001 0.004 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.022 0.190 0.108 0.538 28 D 0.154 0.021 0.003 0.001 0.002 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.035 0.031 0.100 0.646 29 Y 0.091 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.044 0.024 0.095 0.729 30 T 0.025 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.040 0.032 0.110 0.774 31 G 0.008 0.015 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.014 0.001 0.001 0.001 0.001 0.001 0.001 0.070 0.029 0.120 0.735 32 K 0.012 0.033 0.001 0.001 0.001 0.001 0.001 0.001 0.009 0.001 0.033 0.001 0.003 0.001 0.001 0.001 0.033 0.014 0.115 0.744 33 V 0.020 0.106 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.002 0.001 0.002 0.001 0.001 0.031 0.016 0.084 0.735 34 S 0.104 0.771 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.042 0.009 0.073 35 E 0.025 0.822 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.034 0.010 0.105 36 E 0.009 0.885 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.013 0.006 0.086 37 I 0.012 0.929 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.034 0.002 0.021 38 E 0.010 0.912 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.027 0.005 0.044 39 D 0.019 0.843 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.023 0.011 0.101 40 I 0.067 0.248 0.232 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.318 0.033 0.095 41 I 0.249 0.092 0.015 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.131 0.097 0.405 42 K 0.102 0.013 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.007 0.148 0.070 0.654 43 K 0.005 0.023 0.004 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.007 0.087 0.086 0.786 44 G 0.087 0.022 0.004 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.009 0.135 0.117 0.621 45 E 0.049 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.029 0.059 0.067 0.784 46 T 0.029 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.026 0.015 0.055 0.871 47 Q 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.078 0.015 0.066 0.834 48 T 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.039 0.011 0.071 0.873 49 L 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.040 0.014 0.093 0.846