# TARGET T0342 # Using neural net t06-IDGaaH13-3-13-7-13-9-13-11-n_sep-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 20 (1 n_sep ) # The input amino acid frequencies were determined from # alignment T0342.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 3.73689 # Pos AA G H I J K L M N P Q R S T U V W A B C D 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 K 0.047 0.009 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.051 0.016 0.119 0.752 2 K 0.059 0.003 0.007 0.001 0.004 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.226 0.012 0.186 0.497 3 I 0.015 0.001 0.002 0.001 0.002 0.004 0.006 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.457 0.003 0.103 0.402 4 I 0.001 0.001 0.001 0.001 0.030 0.008 0.023 0.012 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.857 0.001 0.012 0.055 5 C 0.001 0.001 0.001 0.001 0.003 0.001 0.002 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.705 0.001 0.033 0.242 6 M 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.003 0.899 0.003 0.015 0.073 7 G 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.003 0.009 0.017 0.002 0.003 0.271 0.014 0.137 0.540 8 A 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.017 0.001 0.008 0.006 0.002 0.002 0.506 0.007 0.077 0.368 9 K 0.006 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.025 0.001 0.001 0.002 0.002 0.001 0.001 0.167 0.006 0.236 0.543 10 E 0.079 0.015 0.001 0.001 0.001 0.001 0.001 0.001 0.034 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.105 0.012 0.093 0.658 11 N 0.100 0.067 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.103 0.022 0.072 0.631 12 G 0.573 0.031 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.011 0.034 0.018 0.322 13 L 0.063 0.036 0.121 0.012 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.040 0.004 0.266 0.455 14 P 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.999 15 L 0.008 0.013 0.001 0.001 0.010 0.006 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.030 0.001 0.112 0.815 16 E 0.019 0.082 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.021 0.003 0.113 0.758 17 Y 0.122 0.278 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.016 0.008 0.094 0.479 18 Q 0.052 0.761 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.019 0.004 0.012 0.150 19 E 0.033 0.741 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.012 0.006 0.021 0.185 20 K 0.051 0.775 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.009 0.018 0.007 0.137 21 L 0.114 0.729 0.011 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.011 0.026 0.002 0.106 22 K 0.118 0.490 0.014 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.100 0.051 0.025 0.197 23 A 0.233 0.192 0.014 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.021 0.095 0.019 0.422 24 I 0.435 0.125 0.028 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.003 0.004 0.077 0.028 0.018 0.270 25 E 0.043 0.067 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.001 0.004 0.004 0.012 0.003 0.136 0.012 0.211 0.498 26 P 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.004 0.992 27 N 0.015 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.012 0.019 0.047 0.004 0.012 0.002 0.001 0.001 0.340 0.006 0.108 0.420 28 D 0.418 0.011 0.002 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.038 0.024 0.037 0.464 29 Y 0.163 0.052 0.005 0.001 0.001 0.001 0.001 0.001 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.067 0.008 0.188 0.501 30 T 0.130 0.037 0.005 0.001 0.001 0.001 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.053 0.020 0.158 0.586 31 G 0.081 0.060 0.032 0.003 0.004 0.005 0.003 0.002 0.002 0.001 0.001 0.001 0.002 0.003 0.001 0.001 0.089 0.014 0.087 0.611 32 K 0.155 0.014 0.029 0.002 0.005 0.003 0.003 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.033 0.006 0.153 0.593 33 V 0.060 0.018 0.002 0.008 0.003 0.006 0.004 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.105 0.003 0.080 0.707 34 S 0.017 0.010 0.003 0.001 0.006 0.005 0.026 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.033 0.001 0.198 0.689 35 E 0.004 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.001 0.017 0.967 36 E 0.005 0.023 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.007 0.011 0.231 0.723 37 I 0.035 0.045 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.007 0.695 0.217 38 E 0.009 0.933 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.051 39 D 0.003 0.930 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.008 0.057 40 I 0.010 0.931 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.002 0.052 41 I 0.010 0.954 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.008 0.001 0.026 42 K 0.015 0.930 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.015 0.003 0.033 43 K 0.063 0.817 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.045 0.002 0.072 44 G 0.279 0.393 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.118 0.007 0.195 45 E 0.123 0.102 0.410 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.018 0.032 0.308 46 T 0.028 0.094 0.016 0.015 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.039 0.006 0.050 0.745 47 Q 0.071 0.075 0.004 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.001 0.001 0.112 0.018 0.067 0.639 48 T 0.101 0.072 0.013 0.003 0.001 0.001 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.054 0.017 0.087 0.643 49 L 0.066 0.060 0.011 0.002 0.001 0.001 0.001 0.001 0.004 0.001 0.001 0.001 0.003 0.001 0.001 0.001 0.121 0.011 0.078 0.633