# TARGET T0342 # Using neural net t06-IDGaaH13-3-13-7-13-9-13-11-ebghstl-dssp-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 7 (1 EBGHSTL ) # The input amino acid frequencies were determined from # alignment T0342.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 3.73689 # Pos AA E B G H S T C 10N 1S 5N 5N 5N 5N 5N 5N 5N 1 K 0.013 0.001 0.001 0.001 0.002 0.001 0.984 2 K 0.693 0.007 0.002 0.001 0.007 0.005 0.283 3 I 0.964 0.003 0.001 0.001 0.001 0.001 0.030 4 I 0.988 0.001 0.001 0.001 0.001 0.001 0.009 5 C 0.955 0.002 0.001 0.006 0.004 0.001 0.030 6 M 0.700 0.004 0.001 0.010 0.034 0.012 0.238 7 G 0.220 0.003 0.002 0.004 0.161 0.024 0.585 8 A 0.131 0.025 0.135 0.143 0.111 0.173 0.281 9 K 0.072 0.009 0.220 0.196 0.099 0.283 0.122 10 E 0.054 0.024 0.227 0.137 0.106 0.394 0.058 11 N 0.010 0.005 0.018 0.035 0.057 0.856 0.019 12 G 0.006 0.003 0.009 0.004 0.183 0.611 0.183 13 L 0.017 0.024 0.001 0.001 0.069 0.003 0.884 14 P 0.025 0.035 0.002 0.007 0.008 0.002 0.922 15 L 0.006 0.002 0.077 0.843 0.011 0.031 0.030 16 E 0.002 0.001 0.069 0.890 0.004 0.023 0.011 17 Y 0.001 0.001 0.041 0.939 0.001 0.011 0.006 18 Q 0.003 0.001 0.014 0.967 0.002 0.009 0.006 19 E 0.006 0.001 0.022 0.935 0.005 0.024 0.007 20 K 0.003 0.001 0.028 0.906 0.005 0.050 0.008 21 L 0.008 0.003 0.049 0.834 0.011 0.075 0.019 22 K 0.024 0.004 0.062 0.663 0.056 0.155 0.037 23 A 0.046 0.005 0.069 0.516 0.048 0.252 0.063 24 I 0.092 0.035 0.013 0.170 0.267 0.045 0.377 25 E 0.040 0.020 0.003 0.010 0.061 0.010 0.857 26 P 0.030 0.013 0.088 0.050 0.116 0.442 0.262 27 N 0.035 0.016 0.113 0.028 0.182 0.463 0.163 28 D 0.039 0.007 0.182 0.030 0.252 0.237 0.254 29 Y 0.069 0.033 0.072 0.046 0.204 0.252 0.324 30 T 0.077 0.035 0.053 0.030 0.163 0.348 0.294 31 G 0.080 0.020 0.017 0.016 0.355 0.124 0.388 32 K 0.121 0.061 0.010 0.020 0.100 0.057 0.631 33 V 0.100 0.062 0.005 0.016 0.097 0.018 0.702 34 S 0.044 0.012 0.007 0.033 0.032 0.009 0.862 35 E 0.007 0.001 0.074 0.772 0.044 0.077 0.026 36 E 0.005 0.003 0.068 0.803 0.014 0.077 0.030 37 I 0.001 0.001 0.030 0.948 0.001 0.012 0.008 38 E 0.001 0.001 0.012 0.973 0.002 0.008 0.004 39 D 0.001 0.001 0.009 0.974 0.002 0.011 0.004 40 I 0.001 0.001 0.018 0.954 0.003 0.019 0.004 41 I 0.005 0.003 0.008 0.936 0.014 0.024 0.011 42 K 0.009 0.003 0.010 0.809 0.012 0.119 0.039 43 K 0.005 0.003 0.013 0.575 0.029 0.332 0.044 44 G 0.007 0.002 0.018 0.217 0.048 0.547 0.162 45 E 0.017 0.005 0.041 0.143 0.119 0.087 0.588 46 T 0.057 0.018 0.114 0.163 0.144 0.070 0.434 47 Q 0.072 0.014 0.079 0.108 0.161 0.171 0.395 48 T 0.031 0.016 0.013 0.023 0.011 0.029 0.877 49 L 0.002 0.001 0.001 0.001 0.001 0.001 0.996