# TARGET T0342 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-bys-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 11 (1 Bystroff ) # The input amino acid frequencies were determined from # alignment T0342.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 3.73689 # Pos AA H E P G Y N L T D S C 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 K 0.061 0.342 0.340 0.068 0.100 0.019 0.037 0.012 0.016 0.005 0.001 2 K 0.020 0.462 0.402 0.012 0.022 0.044 0.010 0.001 0.027 0.001 0.001 3 I 0.005 0.740 0.202 0.001 0.012 0.019 0.001 0.001 0.019 0.001 0.001 4 I 0.009 0.763 0.163 0.002 0.007 0.031 0.001 0.001 0.024 0.001 0.001 5 C 0.018 0.437 0.409 0.003 0.008 0.092 0.001 0.001 0.030 0.001 0.001 6 M 0.068 0.583 0.140 0.030 0.046 0.053 0.009 0.002 0.066 0.001 0.001 7 G 0.095 0.077 0.135 0.027 0.301 0.023 0.061 0.081 0.015 0.184 0.002 8 A 0.426 0.093 0.305 0.038 0.056 0.028 0.006 0.007 0.009 0.030 0.003 9 K 0.827 0.044 0.064 0.035 0.011 0.010 0.003 0.002 0.001 0.003 0.001 10 E 0.755 0.043 0.021 0.143 0.008 0.010 0.007 0.002 0.010 0.001 0.001 11 N 0.022 0.004 0.009 0.759 0.002 0.003 0.191 0.005 0.005 0.001 0.001 12 G 0.002 0.001 0.003 0.004 0.003 0.001 0.486 0.466 0.001 0.034 0.001 13 L 0.011 0.390 0.515 0.003 0.029 0.019 0.001 0.001 0.030 0.001 0.001 14 P 0.027 0.004 0.896 0.001 0.001 0.064 0.001 0.001 0.002 0.001 0.006 15 L 0.967 0.002 0.008 0.016 0.001 0.002 0.001 0.002 0.001 0.001 0.001 16 E 0.968 0.002 0.006 0.021 0.001 0.001 0.001 0.001 0.001 0.001 0.001 17 Y 0.940 0.002 0.003 0.050 0.001 0.002 0.001 0.001 0.001 0.001 0.001 18 Q 0.980 0.002 0.005 0.008 0.001 0.002 0.001 0.001 0.001 0.001 0.001 19 E 0.977 0.004 0.006 0.011 0.001 0.001 0.001 0.001 0.001 0.001 0.001 20 K 0.943 0.002 0.003 0.048 0.001 0.001 0.001 0.001 0.001 0.001 0.001 21 L 0.823 0.023 0.055 0.080 0.003 0.006 0.003 0.001 0.004 0.001 0.001 22 K 0.882 0.019 0.026 0.050 0.004 0.004 0.010 0.002 0.002 0.001 0.001 23 A 0.675 0.068 0.077 0.132 0.023 0.010 0.006 0.004 0.005 0.001 0.001 24 I 0.319 0.224 0.223 0.158 0.011 0.025 0.002 0.001 0.036 0.001 0.001 25 E 0.050 0.171 0.413 0.001 0.022 0.028 0.031 0.001 0.274 0.007 0.001 26 P 0.417 0.005 0.410 0.034 0.001 0.026 0.001 0.001 0.001 0.001 0.107 27 N 0.087 0.083 0.140 0.281 0.063 0.117 0.140 0.029 0.054 0.004 0.001 28 D 0.256 0.098 0.117 0.320 0.046 0.040 0.080 0.014 0.023 0.005 0.001 29 Y 0.263 0.203 0.244 0.140 0.065 0.034 0.017 0.009 0.017 0.007 0.001 30 T 0.184 0.184 0.143 0.420 0.028 0.014 0.009 0.002 0.016 0.001 0.001 31 G 0.065 0.022 0.108 0.019 0.194 0.004 0.035 0.179 0.004 0.369 0.001 32 K 0.153 0.185 0.461 0.072 0.034 0.058 0.009 0.003 0.017 0.002 0.007 33 V 0.107 0.315 0.392 0.060 0.022 0.056 0.010 0.002 0.033 0.003 0.001 34 S 0.088 0.090 0.711 0.007 0.051 0.033 0.002 0.001 0.010 0.006 0.001 35 E 0.962 0.002 0.007 0.017 0.003 0.002 0.002 0.004 0.001 0.001 0.001 36 E 0.887 0.012 0.026 0.051 0.005 0.008 0.001 0.001 0.008 0.001 0.001 37 I 0.974 0.001 0.001 0.022 0.001 0.001 0.001 0.001 0.001 0.001 0.001 38 E 0.992 0.001 0.002 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 39 D 0.977 0.001 0.002 0.019 0.001 0.001 0.001 0.001 0.001 0.001 0.001 40 I 0.961 0.001 0.002 0.035 0.001 0.001 0.001 0.001 0.001 0.001 0.001 41 I 0.891 0.022 0.032 0.042 0.002 0.006 0.001 0.001 0.004 0.001 0.001 42 K 0.815 0.029 0.058 0.072 0.003 0.009 0.008 0.001 0.005 0.001 0.001 43 K 0.547 0.030 0.157 0.241 0.005 0.005 0.008 0.002 0.005 0.001 0.001 44 G 0.135 0.006 0.048 0.035 0.031 0.005 0.139 0.523 0.004 0.075 0.001 45 E 0.442 0.101 0.240 0.136 0.015 0.042 0.008 0.002 0.011 0.002 0.001 46 T 0.333 0.192 0.233 0.146 0.039 0.027 0.009 0.003 0.015 0.002 0.001 47 Q 0.330 0.162 0.206 0.163 0.039 0.042 0.021 0.003 0.032 0.002 0.001 48 T 0.217 0.264 0.265 0.156 0.033 0.031 0.006 0.002 0.024 0.001 0.001 49 L 0.175 0.235 0.296 0.094 0.081 0.033 0.022 0.013 0.029 0.021 0.001