# List of top-scoring protein chains for T0342.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1ebbA 202 1.52e+00 c.60.1.1 64900 1h2eA 207 1.58e+00 c.60.1.1 70857 1utg 70 7.84e+00 1utg a.101.1.1 18813 1agi 125 8.03e+00 7rsa d.5.1.1 37303 1pytD 251 8.91e+00 5ptp b.47.1.2 26058 1keaA 221 9.91e+00 a.96.1.2 68491 1zbmA 280 1.09e+01 1s1hO 65 1.25e+01 i.1.1.1 105167 1knwA 425 1.52e+01 b.49.2.3,c.1.6.1 90969,90970 1zd1A 284 1.56e+01 2es9A 115 1.70e+01 2a22A 215 1.74e+01 1r45A 204 1.79e+01 1deqA 390 1.79e+01 i.9.1.1 45987 1eysL 280 1.87e+01 6prcL f.26.1.1 43515 1z6nA 167 1.87e+01 1qhhC 115 2.15e+01 1pjr 1frd 98 2.34e+01 1awd d.15.4.1 37648 1novA 355 2.58e+01 2bbvA b.121.4.4 23326 1a6zA 275 2.69e+01 1agdA b.1.1.2,d.19.1.1 20781,38280 1cpy 421 2.75e+01 1ivyA c.69.1.5 34651 1wpxA 421 2.79e+01 1e7oA 62 2.86e+01 b.34.2.1 83169 1lk5A 229 2.91e+01 c.124.1.4,d.58.40.1 73960,73961 1e6hA 62 2.91e+01 b.34.2.1 70084 1mvyA 628 2.93e+01 b.71.1.1,c.1.8.1 79547,79548 1jgiA 628 2.93e+01 b.71.1.1,c.1.8.1 66676,66677 1tuc 63 2.94e+01 1tuc b.34.2.1 24492 1g5aA 628 3.01e+01 b.71.1.1,c.1.8.1 65152,65153 1t8pA 267 3.21e+01 c.60.1.1 106667 1d4dA 572 3.27e+01 1qjdA a.138.1.3,c.3.1.4,d.168.1.1 19702,30439,42322 1w8aA 192 3.34e+01 1d4cA 572 3.45e+01 1qjdA a.138.1.3,c.3.1.4,d.168.1.1 19698,30435,42318 1abv 134 3.62e+01 1abv a.70.1.1 18317 1wwhA 119 3.89e+01 1tdtA 259 3.90e+01 3tdt b.81.1.2 28055 1mwwA 128 4.37e+01 d.80.1.4 91483 3tdt 274 4.47e+01 3tdt b.81.1.2 28053 2bwkA 121 4.54e+01 2bnwA 53 4.62e+01 1x38A 602 4.67e+01 1ex1A 605 4.67e+01 1ex1A c.1.8.7,c.23.11.1 29013,31347 1c2yA 156 4.91e+01 1rvv1 c.16.1.1 30972 1pzqA 60 4.91e+01 a.34.3.1 95466 1e6gA 62 4.91e+01 b.34.2.1 70083 2dayA 128 5.12e+01 1ee2A 373 5.15e+01 2ohxA b.35.1.2,c.2.1.1 24663,29679 2eboA 74 5.18e+01 2eboA h.3.2.1 45754 1hd3A 62 5.67e+01 b.34.2.1 65802 1qlhA 374 5.81e+01 2ohxA b.35.1.2,c.2.1.1 24685,29701 1eg7A 557 5.88e+01 1eg7A c.37.1.10 32241 1heuA 374 5.88e+01 2ohxA b.35.1.2,c.2.1.1 60979,60980 1n8kA 374 5.88e+01 b.35.1.2,c.2.1.1 80298,80299 1ju9A 374 5.89e+01 b.35.1.2,c.2.1.1 63293,63294 1qv6A 374 5.91e+01 b.35.1.2,c.2.1.1 96348,96349 1pwt 61 5.96e+01 1tud b.34.2.1 24490 1fpmA 557 6.04e+01 c.37.1.10 59945 1sezA 504 6.11e+01 c.3.1.2,d.16.1.5 98822,98823 1axgA 374 6.17e+01 2ohxA b.35.1.2,c.2.1.1 24691,29707 1zcbA 362 6.32e+01 1irqA 71 6.36e+01 a.43.1.4 66297 1uhcA 79 6.45e+01 b.34.2.1 99397 1axeA 374 6.46e+01 2ohxA b.35.1.2,c.2.1.1 24681,29697 1jvwA 167 6.48e+01 d.26.1.1 71907 1p5zB 263 6.56e+01 c.37.1.1 87815 1negA 83 6.70e+01 b.34.2.1 80425 1mgoA 374 6.77e+01 b.35.1.2,c.2.1.1 79094,79095 1a71A 374 6.78e+01 2ohxA b.35.1.2,c.2.1.1 24673,29689 1ejfA 125 6.82e+01 1ejfA b.15.1.2 23683 1u06A 62 6.82e+01 1bw3 125 6.85e+01 1bw4 b.52.1.2 26899 1w9gA 104 7.21e+01 2a30A 248 7.41e+01 1qpiA 203 7.43e+01 2tct a.4.1.9,a.121.1.1 16072,19249 1wz7A 111 7.48e+01 1bjz 207 7.63e+01 2tct a.4.1.9,a.121.1.1 16065,19242 2tct 207 7.63e+01 2tct a.4.1.9,a.121.1.1 16063,19240 1wriA 93 7.73e+01 2b3nA 159 7.74e+01 1o20A 427 7.91e+01 c.82.1.1 86556 1nbwB 117 7.93e+01 c.51.3.2 80396 1a6i 217 7.93e+01 2tct a.4.1.9,a.121.1.1 16066,19243 2trt 217 8.10e+01 2tct a.4.1.9,a.121.1.1 16064,19241 1z2aA 168 8.16e+01 1s62A 106 8.36e+01 1lzlA 323 8.54e+01 c.69.1.2 78306 1el5A 389 8.71e+01 1b3mA c.3.1.2,d.16.1.3 30369,37937 1l9cA 389 8.74e+01 c.3.1.2,d.16.1.3 77815,77816 2g9iA 249 8.90e+01