# List of top-scoring protein chains for t04-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2tct 207 5.01e-02 2tct a.4.1.9,a.121.1.1 16063,19240 1z6nA 167 1.42e-01 1a6i 217 3.39e-01 2tct a.4.1.9,a.121.1.1 16066,19243 2d1eA 248 5.44e-01 1zbmA 280 6.26e-01 1pzqA 60 7.80e-01 a.34.3.1 95466 1bjx 110 9.30e-01 1bjx c.47.1.2 32774 1z4eA 153 1.00e+00 1h2eA 207 1.18e+00 c.60.1.1 70857 2be3A 226 1.69e+00 1w9gA 104 1.92e+00 1dpuA 99 1.96e+00 1dpuA a.4.5.16 16150 1nteA 82 2.22e+00 b.36.1.1 86163 1wz7A 111 2.52e+00 1r45A 204 2.79e+00 1c3pA 375 2.86e+00 1c3pA c.42.1.2 32606 1r6jA 82 3.12e+00 b.36.1.1 97151 2utgA 70 3.21e+00 1utg a.101.1.1 18814 1frd 98 3.78e+00 1awd d.15.4.1 37648 1utg 70 4.04e+00 1utg a.101.1.1 18813 1z1dA 103 4.07e+00 1xgkA 352 4.12e+00 1k6xA 352 4.26e+00 c.2.1.2 68238 1keaA 221 4.32e+00 a.96.1.2 68491 1jvwA 167 4.49e+00 d.26.1.1 71907 2g8yA 385 5.14e+00 1n6aA 259 5.14e+00 b.76.2.1,b.85.7.1 80121,80122 1x8dA 104 5.27e+00 1pp7U 131 5.47e+00 a.4.5.44 94973 1irqA 71 5.58e+00 a.43.1.4 66297 2cyeA 133 6.23e+00 1zwwA 256 6.34e+00 1v37A 177 7.11e+00 1mbyA 88 7.14e+00 d.223.1.1 78931 1tadA 324 7.28e+00 1cipA a.66.1.1,c.37.1.8 18194,32077 1tag 324 7.52e+00 1cipA a.66.1.1,c.37.1.8 18197,32080 1i19A 561 7.53e+00 1i19A d.58.32.3,d.145.1.1 61522,61523 1x3lA 440 7.82e+00 1wpbA 172 8.40e+00 1nbwB 117 8.46e+00 c.51.3.2 80396 1uekA 275 8.48e+00 d.14.1.5,d.58.26.5 88483,88484 2gdzA 267 8.82e+00 2d0oB 125 1.00e+01 1or0A 160 1.01e+01 d.153.1.2 93445 1agi 125 1.05e+01 7rsa d.5.1.1 37303 1ln4A 104 1.07e+01 d.68.4.1 74043 1n35A 1267 1.11e+01 e.8.1.4 79935 1f0iA 504 1.18e+01 1f0iA d.136.1.2,d.136.1.2 59566,59567 2f69A 261 1.30e+01 1hnr 47 1.31e+01 1hnr a.155.1.1 17896 1q5nA 454 1.35e+01 a.127.1.1 95901 1h8eA 510 1.36e+01 1skyB a.69.1.1,b.49.1.1,c.37.1.11 60738,60739,60740 1e5pA 151 1.38e+01 1bj7 b.60.1.1 59272 2aw5A 541 1.39e+01 1e79A 510 1.40e+01 1skyB a.69.1.1,b.49.1.1,c.37.1.11 18269,26434,32314 1oaiA 59 1.45e+01 a.5.2.3 81255 1fm2A 169 1.49e+01 1fm2A d.153.1.2 59877 1p0kA 349 1.54e+01 c.1.4.1 87648 1sg7A 96 1.56e+01 2c07A 285 1.58e+01 1aj8A 371 1.59e+01 1aj8A a.103.1.1 18900 2av9A 147 1.66e+01 1zoqC 47 1.66e+01 1zt2B 212 1.70e+01 1h3oB 76 1.72e+01 a.22.1.3 76645 1ogqA 313 1.73e+01 c.10.2.8 86996 1ex1A 605 1.73e+01 1ex1A c.1.8.7,c.23.11.1 29013,31347 1jw2A 72 1.74e+01 a.23.5.1 67372 2ck3A 510 1.78e+01 2aobA 99 1.89e+01 1gjsA 65 1.93e+01 1gab a.8.1.2 60578 1c4rA 182 2.05e+01 1c4rA b.29.1.4 24229 2eboA 74 2.09e+01 2eboA h.3.2.1 45754 1cd0A 111 2.21e+01 8fabA b.1.1.1 20559 1zz1A 369 2.25e+01 1qo7A 394 2.31e+01 1qo7A c.69.1.11 34697 1azpA 66 2.39e+01 1azpA b.34.13.1 37467 1lfpA 249 2.40e+01 e.39.1.1 73885 1bv1 159 2.44e+01 1bv1 d.129.3.1 41313 1q3eA 207 2.46e+01 b.82.3.2 95669 1svy 114 2.53e+01 1svy d.109.1.1 40831 1xyiA 66 2.67e+01 1ygtA 111 2.69e+01 2fi9A 128 2.71e+01 2bo3A 94 2.75e+01 1i36A 264 2.75e+01 a.100.1.8,c.2.1.6 71108,71109 1r1mA 164 2.92e+01 d.79.7.1 96820 1z2wA 192 2.93e+01 2gz4A 207 2.94e+01 1dzkA 157 2.94e+01 1obpA b.60.1.1 27096 1vmjA 151 2.96e+01 2gvkA 317 3.01e+01 1ur1A 378 3.02e+01 c.1.8.3 99804 1fpoA 171 3.04e+01 1fpoA a.2.3.1,a.23.1.1 15693,16487 2booA 247 3.23e+01 1txoA 237 3.24e+01 2fctA 313 3.30e+01 2c9wA 169 3.40e+01 1mpgA 282 3.42e+01 1mpgA a.96.1.3,d.129.1.2 18747,41296 1e8yA 966 3.48e+01 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19152,23187,37635,41715 1svjA 156 3.57e+01 d.220.1.1 106049 2f6hX 419 3.61e+01 2es9A 115 3.63e+01 1hqz1 141 3.65e+01 1jopA 155 3.67e+01 b.82.2.7 84187 1ak5 503 3.68e+01 1ak5 c.1.5.1 28639 1x38A 602 3.68e+01 1kx5B 102 3.76e+01 a.22.1.1 77594 1x1oA 286 3.79e+01 2fvtA 135 3.81e+01 1f00I 282 3.84e+01 1f00I b.1.14.1,b.1.14.1,d.169.1.3 22368,22369,42439 1aihA 170 3.85e+01 1aihA d.163.1.1 42149 1qjtA 99 3.89e+01 1eh2 a.39.1.6 17335 1khdA 345 3.90e+01 a.46.2.1,c.27.1.1 77400,77401 1mhyG 169 3.92e+01 1mtyG a.23.3.1 16518 2b1eA 564 3.97e+01 1ig8A 486 4.03e+01 2yhx c.55.1.3,c.55.1.3 64746,64747 1rec 201 4.08e+01 1rec a.39.1.5 17326 1wr4A 36 4.09e+01 1z54A 132 4.11e+01 1yx1A 264 4.12e+01 1xeeA 91 4.19e+01 2b8eA 273 4.24e+01 1vkkA 154 4.30e+01 d.109.1.2 108669 1r4gA 53 4.43e+01 a.8.5.1 96996 1mw7A 240 4.53e+01 e.39.1.1 79557 2aghC 31 4.55e+01 1f3mA 80 4.58e+01 1f3mA j.66.1.1 46358 1ukuA 102 4.65e+01 d.58.5.2 99533 1zejA 293 4.66e+01 1j1uA 306 4.73e+01 c.26.1.1 83980 1wriA 93 4.85e+01 1g5aA 628 4.90e+01 b.71.1.1,c.1.8.1 65152,65153 1dp4A 435 4.91e+01 1dp4A c.93.1.1 35710 1o6dA 163 4.93e+01 c.116.1.3 92567 1awd 94 5.01e+01 1awd d.15.4.1 37673 1e7uA 961 5.21e+01 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19147,23182,37630,41710 1sknP 92 5.24e+01 1sknP a.37.1.1 17127 1ej2A 181 5.25e+01 1f9aA c.26.1.3 59414 1me8A 503 5.30e+01 c.1.5.1 79028 1pmzA 86 5.52e+01 a.39.1.10 104195 1evsA 187 5.53e+01 1evsA a.26.1.1 16845 1uz3A 102 5.54e+01 1csn 298 5.58e+01 1csn d.144.1.7 41664 1vp8A 201 5.61e+01 2ceyA 306 5.71e+01 1bxyA 60 5.72e+01 1bxyA d.59.1.1 39525 1pyvA 54 5.75e+01 j.36.4.1 95376 2f4nA 273 5.77e+01 1qxoA 388 5.90e+01 d.258.1.1 96539 1wmmA 145 6.00e+01 1jo0A 98 6.01e+01 d.68.4.1 77140 1ifyA 49 6.04e+01 a.5.2.1 71207 1m8jA 181 6.05e+01 c.26.1.3 84875 1utuA 108 6.16e+01 1f6yA 262 6.18e+01 1f6yA c.1.21.2 29673 1oksA 56 6.20e+01 a.8.5.1 93271 1zx5A 300 6.22e+01 1o82A 70 6.23e+01 a.64.2.1 92630 1tzyD 103 6.31e+01 a.22.1.1 107533 1ughI 82 6.35e+01 1ugiA d.17.5.1 38133 1q0uA 219 6.52e+01 c.37.1.19 95512 1nnwA 252 6.54e+01 d.159.1.5 80674 1z7xW 461 6.59e+01 1pylA 97 6.71e+01 d.1.1.2 104391 2cxxA 190 6.72e+01 1tuc 63 6.77e+01 1tuc b.34.2.1 24492 1ksoA 101 6.84e+01 a.39.1.2 72926 1wr3A 36 6.85e+01 1mqsA 671 6.96e+01 e.25.1.1 79414 2aliA 158 6.99e+01 2gx9A 129 7.13e+01 2b18A 164 7.15e+01 1ko7A 314 7.23e+01 c.98.2.1,c.91.1.2 72797,72798 1yz7A 188 7.26e+01 1y74A 57 7.28e+01 1uj6A 227 7.37e+01 c.124.1.4,d.58.40.1 107898,107899 2ayuA 417 7.38e+01 1a4yA 460 7.41e+01 1a4yA c.10.1.1 30852 2bj7A 138 7.47e+01 1ve6A 582 7.50e+01 2fhzA 109 7.63e+01 1x1gA 129 7.66e+01 1w24A 182 7.67e+01 1jvr 137 7.69e+01 1jvr a.61.1.2 18132 1s69A 124 7.77e+01 a.1.1.1 105305 2bwbA 46 7.80e+01 1tq4A 413 7.92e+01 c.37.1.8 107201 1cjbA 231 7.92e+01 1qk3A c.61.1.1 34079 1qlaC 256 8.00e+01 1qlaC f.21.2.1 43722 1n6jG 35 8.12e+01 1nt2B 258 8.13e+01 a.183.1.1 86150 1cmbA 104 8.16e+01 1cmbA a.43.1.5 17460 1v9wA 130 8.18e+01 c.47.1.16 108453 1pxwA 128 8.22e+01 d.79.3.1 95305 1u5kA 244 8.32e+01 1w9cA 321 8.33e+01 1rreA 200 8.39e+01 d.14.1.10 97791 1kpgA 287 8.46e+01 c.66.1.18 68735 1vejA 74 8.47e+01 1omrA 201 8.50e+01 a.39.1.5 93349 4pah 308 8.50e+01 4pah d.178.1.1 42576 2f6kA 307 8.57e+01 2c5kT 95 8.60e+01 1vcc 77 8.60e+01 1vcc d.121.1.1 41092 1sfuA 75 8.74e+01 a.4.5.19 105503 1kxpD 458 8.76e+01 a.126.1.1,a.126.1.1,a.126.1.1 73160,73161,73162 1jm0A 50 8.76e+01 k.8.1.1 66870 1v54D 147 8.77e+01 f.23.1.1 100325 1lniA 96 8.82e+01 d.1.1.2 74046 1yh6A 179 8.85e+01 1b9rA 105 8.88e+01 1ayfA d.15.4.1 37683 1wwiA 148 8.94e+01 1jj2I 145 8.94e+01 1ffkG c.21.1.1 63094 1s57A 153 8.98e+01 1yzxA 226 8.98e+01