# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1utg 70 5.40e-01 1utg a.101.1.1 18813 2utgA 70 5.59e-01 1utg a.101.1.1 18814 2tct 207 1.10e+00 2tct a.4.1.9,a.121.1.1 16063,19240 1a6i 217 2.66e+00 2tct a.4.1.9,a.121.1.1 16066,19243 1z1dA 103 4.70e+00 1irqA 71 4.70e+00 a.43.1.4 66297 1pzqA 60 4.80e+00 a.34.3.1 95466 1z6nA 167 4.85e+00 1tuc 63 5.85e+00 1tuc b.34.2.1 24492 2d1eA 248 7.40e+00 1agi 125 7.72e+00 7rsa d.5.1.1 37303 1yewB 247 1.02e+01 1i36A 264 1.11e+01 a.100.1.8,c.2.1.6 71108,71109 1jvwA 167 1.20e+01 d.26.1.1 71907 1hnr 47 1.33e+01 1hnr a.155.1.1 17896 1ioj 57 1.36e+01 1ioj j.39.1.1 46293 1x1nA 524 1.39e+01 1h2eA 207 1.55e+01 c.60.1.1 70857 1dpuA 99 1.63e+01 1dpuA a.4.5.16 16150 1br1B 150 1.75e+01 1wdcC a.39.1.5 17309 1qb2A 109 1.77e+01 1qb2A a.36.1.1 17125 1e6cA 173 1.86e+01 1shkA c.37.1.2 59296 1f5vA 240 1.91e+01 1bkjA d.90.1.1 40255 1dgfA 497 1.93e+01 1cf9A e.5.1.1 42782 1f0iA 504 1.93e+01 1f0iA d.136.1.2,d.136.1.2 59566,59567 1cozA 129 1.98e+01 1cozA c.26.1.2 31598 1c3pA 375 2.40e+01 1c3pA c.42.1.2 32606 1vmjA 151 2.47e+01 2be3A 226 2.48e+01 1kx5B 102 2.58e+01 a.22.1.1 77594 1g5aA 628 2.60e+01 b.71.1.1,c.1.8.1 65152,65153 1zoqC 47 2.61e+01 1pp7U 131 2.72e+01 a.4.5.44 94973 1whsA 255 2.75e+01 1ivyA c.69.1.5 34649 1uekA 275 2.76e+01 d.14.1.5,d.58.26.5 88483,88484 1x7yA 400 2.87e+01 1ww7A 160 2.95e+01 1devB 41 3.01e+01 1devB j.64.1.1 46354 1keaA 221 3.35e+01 a.96.1.2 68491 1efvB 255 3.38e+01 1efvB c.26.2.3 31634 1wjvA 79 3.39e+01 1whtA 256 3.64e+01 1ivyA c.69.1.5 34646 1olsA 400 3.83e+01 c.36.1.11 93331 1i1iP 681 4.06e+01 1i1iP d.92.1.5 40297 1pylA 97 4.11e+01 d.1.1.2 104391 1qo7A 394 4.11e+01 1qo7A c.69.1.11 34697 2cyeA 133 4.21e+01 1wz8A 264 4.23e+01 2f9fA 177 4.24e+01 2eboA 74 4.33e+01 2eboA h.3.2.1 45754 1frd 98 4.35e+01 1awd d.15.4.1 37648 2cdcA 366 4.42e+01 1q5nA 454 4.46e+01 a.127.1.1 95901 1fhoA 119 4.66e+01 1fhoA b.55.1.1 26982 1c94A 38 4.71e+01 1c94A k.11.1.1 46428 1sfe 180 4.72e+01 1sfe a.4.2.1,c.55.7.1 16073,33748 1qa4A 57 4.74e+01 1qa4A j.52.1.1 46334 1v37A 177 4.77e+01 1qa5A 58 4.84e+01 1qa5A j.52.1.1 46335 1jvr 137 4.99e+01 1jvr a.61.1.2 18132 1pfsA 78 5.17e+01 1pfsA b.40.4.7 25391 2bfdA 400 5.18e+01 1v1rA 400 5.60e+01 c.36.1.11 108272 1rp4A 389 5.62e+01 a.227.1.1 105027 1klxA 138 5.78e+01 a.118.18.1 77440 1ektA 53 5.84e+01 1ektA b.129.1.3 38764 1v54D 147 5.90e+01 f.23.1.1 100325 1hl9A 449 5.91e+01 b.71.1.3,c.1.8.11 90650,90651 2ayuA 417 5.94e+01 2occD 147 5.98e+01 1ocrD f.23.1.1 43521 2booA 247 6.10e+01 1yiyA 429 6.12e+01 1zz1A 369 6.17e+01 1xpjA 126 6.36e+01 1e5pA 151 6.38e+01 1bj7 b.60.1.1 59272 2b4nA 42 6.42e+01 2bykB 128 6.57e+01 1n6aA 259 6.59e+01 b.76.2.1,b.85.7.1 80121,80122 1twdA 256 6.66e+01 c.1.30.1 107397 1mvwC 147 6.74e+01 i.15.1.1 79525 1wphA 201 6.75e+01 1yizA 429 7.06e+01 2az2A 73 7.11e+01 1uj6A 227 7.15e+01 c.124.1.4,d.58.40.1 107898,107899 1q60A 99 7.32e+01 2az0A 73 7.34e+01 1ibrB 462 7.41e+01 1qgrA a.118.1.1 19120 1kbhB 59 7.44e+01 a.153.1.1 68383 1e0nA 27 7.60e+01 b.72.1.1 27807 1yliA 153 8.18e+01 1ktbA 405 8.22e+01 b.71.1.1,c.1.8.1 72960,72961 1eg7A 557 8.36e+01 1eg7A c.37.1.10 32241 1ucpA 91 8.70e+01 a.77.1.5 99186 1y7pA 223 8.82e+01 1z4eA 153 8.84e+01 1ejrB 101 8.92e+01 1ubpB b.85.3.1 28320