Best Alignments for T0341

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1zjjA/T0341-1zjjA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1zjjA/T0341-1zjjA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.1955e-333.79e-112
1wviA/T0341-1wviA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1wviA/T0341-1wviA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.1635e-311.36e-123
1vjrA/T0341-1vjrA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1vjrA/T0341-1vjrA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.7380e-293.83e-120 c.108.1.14
2c4nA/T0341-2c4nA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2c4nA/T0341-2c4nA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.1180e-292.62e-118
2gfhA/T0341-2gfhA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2gfhA/T0341-2gfhA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.0354e-234.88e-89
1x42A/T0341-1x42A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1x42A/T0341-1x42A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.1695e-228.74e-83
2ah5A/T0341-2ah5A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2ah5A/T0341-2ah5A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.6442e-191.63e-69
1jud/T0341-1jud-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1jud/T0341-1jud-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.0388e-163.60e-70 1qq5A c.108.1.1
2go7A/T0341-2go7A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2go7A/T0341-2go7A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.8642e-167.56e-64
2fdrA/T0341-2fdrA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2fdrA/T0341-2fdrA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.2680e-163.24e-61

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001