Best Alignments for T0340

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1g9oA/T0340-1g9oA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1g9oA/T0340-1g9oA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.7864e-191.09e-64 1pdr b.36.1.1
1tp5A/T0340-1tp5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1tp5A/T0340-1tp5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.6552e-176.15e-58
2fe5A/T0340-2fe5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2fe5A/T0340-2fe5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.7740e-173.47e-57
2fneA/T0340-2fneA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2fneA/T0340-2fneA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.0403e-161.16e-59
2fcfA/T0340-2fcfA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2fcfA/T0340-2fcfA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.4806e-165.49e-55
1qavA/T0340-1qavA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1qavA/T0340-1qavA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.8446e-162.24e-56 1qauA b.36.1.1
2f5yA/T0340-2f5yA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2f5yA/T0340-2f5yA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.6666e-159.57e-57
1wf7A/T0340-1wf7A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1wf7A/T0340-1wf7A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.2941e-142.42e-46
2f0aA/T0340-2f0aA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2f0aA/T0340-2f0aA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.2277e-139.98e-46
1fc6A/T0340-1fc6A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1fc6A/T0340-1fc6A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.5430e-103.34e-29 1fc6A b.36.1.3
c.14.1.2

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001