# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1g9oA 91 9.91e-16 1pdr b.36.1.1 60400 1i92A 91 1.24e-15 1pdr b.36.1.1 61990 1pdr 99 2.20e-14 1pdr b.36.1.1 24771 1bfeA 119 2.38e-14 1pdr b.36.1.1 24775 2fneA 117 2.50e-14 1tp5A 119 4.59e-14 1be9A 119 7.07e-14 1pdr b.36.1.1 24774 2fe5A 94 1.33e-13 2fcfA 103 7.92e-13 1wf7A 103 2.39e-12 1v5lA 103 2.53e-12 b.36.1.1 108378 1n7eA 97 7.06e-12 b.36.1.1 91691 1qavA 90 8.32e-12 1qauA b.36.1.1 24777 1q3oA 109 1.05e-11 b.36.1.1 95700 1n7fA 97 1.42e-11 b.36.1.1 91692 1ihjA 98 1.52e-11 1pdr b.36.1.1 62382 2f5yA 91 2.38e-11 1n99A 166 4.20e-11 b.36.1.1,b.36.1.1 85459,85460 1mfgA 95 5.43e-11 b.36.1.1 79043 1m5zA 91 9.39e-11 b.36.1.1 78676 1l6oA 95 1.12e-10 b.36.1.1 84534 1qauA 112 1.36e-10 1qauA b.36.1.1 24779 1qavB 115 1.60e-10 1qauA b.36.1.1 24780 1b8qA 127 2.00e-10 1qauA b.36.1.1 24781 2f0aA 98 4.25e-10 1i16 130 7.33e-10 1i16 b.36.1.2 24787 1kwaA 88 8.03e-10 1kwaA b.36.1.1 24772 1nf3C 128 2.52e-09 b.36.1.1 85596 1kwaB 88 4.49e-09 1kwaA b.36.1.1 24773 1r6jA 82 2.36e-07 b.36.1.1 97151 1ky9B 448 2.52e-07 b.36.1.4,b.36.1.4,b.47.1.1 73200,73201,73202 1nteA 82 2.92e-07 b.36.1.1 86163 1lcyA 325 2.98e-07 b.36.1.4,b.47.1.1 73834,73835 1fc6A 388 3.33e-07 1fc6A b.36.1.3,c.14.1.2 64738,64739 1te0A 318 6.61e-07 1ky9A 448 1.10e-06 b.36.1.4,b.47.1.1 73198,73199 1sotA 320 4.74e-06 b.36.1.4,b.47.1.1 105852,105853 1y8tA 324 4.30e-04 2bh4X 134 2.17e-01 1db3A 372 2.86e-01 1db3A c.2.1.2 29813 1cot 129 9.76e-01 1ycc a.3.1.1 15899 1bx4A 345 1.21e+00 1bx4A c.72.1.1 34935 1kw4A 89 1.45e+00 a.60.1.2 73077 1koe 172 2.53e+00 1koe d.169.1.5 42448 1pueE 89 2.75e+00 1awcA a.4.5.21 16165 1jzxK 205 3.14e+00 i.1.1.2 67885 1xebA 150 4.04e+00 1p99A 295 4.42e+00 c.94.1.1 94384 1jhfA 202 5.71e+00 a.4.5.2,b.87.1.1 63057,63058 1g65K 211 6.26e+00 d.153.1.4 41907 1rypL 212 6.26e+00 d.153.1.4 41880 1qw2A 102 6.81e+00 d.249.1.1 96456 1xwsA 313 6.91e+00 1z6nA 167 7.12e+00 2bikB 313 7.70e+00 1rm6A 769 9.03e+00 1qpcA 279 9.60e+00 1fgkA d.144.1.7 41685 1k0rA 366 1.06e+01 b.40.4.5,d.52.3.1,d.52.3.1,d.202.1.1 67961,67962,67963,67964 3lck 271 1.07e+01 1fmk d.144.1.7 41686 1dpuA 99 1.10e+01 1dpuA a.4.5.16 16150 1r13A 148 1.10e+01 d.169.1.1,h.1.1.1 96782,96783 1z1dA 103 1.14e+01 1a3lH 218 1.29e+01 1mfa b.1.1.1,b.1.1.2 20241,21253 2aqwA 332 1.33e+01 155c 135 1.33e+01 1ycc a.3.1.1 15900 1pk1B 89 1.40e+01 1skyB 502 1.40e+01 1skyB a.69.1.1,b.49.1.1,c.37.1.11 18313,26478,32358 1uw0A 117 1.42e+01 g.39.1.12 108063 1cis 66 1.43e+01 2sniI k.1.1.1 46375 1t6t1 118 1.56e+01 35c8H 217 1.56e+01 8fabA b.1.1.1,b.1.1.2 20297,21289 1nvmA 345 1.59e+01 a.5.7.1,c.1.10.5 86249,86250 1rurH 218 1.62e+01 b.1.1.1,b.1.1.2 97879,97880 1v9dA 340 1.66e+01 a.207.1.1 100535 1t3qB 788 1.68e+01 d.41.1.1,d.133.1.1 106369,106370 2gn4A 344 1.76e+01 1y96A 86 1.83e+01 1ti6A 875 1.89e+01 b.52.2.2,c.81.1.1 106974,106975 1ialA 453 1.98e+01 1bk5A a.118.1.1 19116 1ah1 129 2.22e+01 1ah1 b.1.1.1 20652 1ql3A 99 2.23e+01 1ycc a.3.1.1 15822 2ajuH 219 2.44e+01 1evlA 401 2.55e+01 1qf6A c.51.1.1,d.104.1.1 33202,40751 1dxrH 258 2.59e+01 6prcH b.41.1.1,f.23.10.1 25456,43433 1l1dA 152 2.60e+01 b.88.1.3 73452 1xocA 520 2.60e+01 1se8A 301 2.73e+01 b.40.4.3 105448 1yhuB 144 2.83e+01 1cfyA 143 2.84e+01 1cof d.109.1.2 40858 1p35A 299 2.85e+01 1p35A b.28.1.1 23925 2b4aA 138 2.92e+01 1r6xA 395 2.92e+01 b.122.1.3,c.26.1.5 97167,97168 1dj8A 89 2.95e+01 1bg8A a.57.1.1 17919 6prcH 258 2.98e+01 6prcH b.41.1.1,f.23.10.1 25457,43436 1cof 143 3.06e+01 1cof d.109.1.2 40860 1sw5A 275 3.08e+01 c.94.1.1 106069 1prcH 259 3.14e+01 6prcH b.41.1.1,f.23.10.1 25460,43445 1b7fA 168 3.17e+01 1b7fA d.58.7.1,d.58.7.1 39169,39170 2cc0A 195 3.21e+01 1afvH 220 3.30e+01 1mfa b.1.1.1,b.1.1.2 20131,21161 1xdyA 298 3.31e+01 1axtL 216 3.31e+01 8fabA b.1.1.1,b.1.1.2 20304,21296 3c2c 112 3.32e+01 1ycc a.3.1.1 15885 1cei 94 3.34e+01 1cei a.28.2.1 16939 1zhvA 134 3.35e+01 2sxl 88 3.36e+01 1b7fA d.58.7.1 39179 1unkA 87 3.44e+01 1cei a.28.2.1 16935 1x84A 189 3.44e+01 1wi9A 72 3.49e+01 3sxlA 184 3.57e+01 1b7fA d.58.7.1,d.58.7.1 39173,39174 1jjtA 228 3.60e+01 1a7tA d.157.1.1 63139 2aabH 243 3.66e+01 1nlbH 218 3.66e+01 b.1.1.1,b.1.1.2 80621,80622 1d6tA 117 3.78e+01 1a6f d.14.1.2 37565 1hztA 190 3.81e+01 1i9aA d.113.1.2 61459 1lnzA 342 3.92e+01 b.117.1.1,c.37.1.8 78112,78113 1e6oH 219 3.92e+01 1igtB b.1.1.1,b.1.1.2 20495,21453 2aa4A 289 3.96e+01 1ai1H 221 4.01e+01 1igtB b.1.1.1,b.1.1.2 19883,20979 1ia9A 280 4.01e+01 1ia9A d.144.1.5 62113 1vs0A 310 4.03e+01 1xbfA 140 4.06e+01 d.273.1.1 109538 1i9aA 182 4.25e+01 1i9aA d.113.1.2 62082 1ae6H 218 4.26e+01 1igtB b.1.1.1,b.1.1.2 20211,21223 1yloA 348 4.36e+01 1hvyA 288 4.43e+01 1bkpA d.117.1.1 41049 1hyxH 224 4.50e+01 1igtB b.1.1.1,b.1.1.2 20167,21191 1qapA 296 4.58e+01 1qpoA c.1.17.1,d.41.2.1 29559,38595 1dvh 79 4.76e+01 1c53 a.3.1.1 15802 1dax 64 4.88e+01 1fxd d.58.1.4 38996 1qo0D 196 4.99e+01 1qo0D c.23.1.3 31125 1rm6B 324 5.09e+01 1yrlA 491 5.21e+01 1fxrA 64 5.22e+01 1fxd d.58.1.4 38993 1zuoA 186 5.30e+01 1fxlA 167 5.32e+01 1b7fA d.58.7.1,d.58.7.1 39183,39184 1bxeA 113 5.33e+01 1bxeA d.55.1.1 38898 1wmiA 90 5.36e+01 1dg6A 191 5.38e+01 1d4vB b.22.1.1 23883 1qf6A 642 5.51e+01 1qf6A c.51.1.1,d.15.10.1,d.67.1.1,d.104.1.1 33210,39551,39562,40759 1dfd 64 5.60e+01 1fxd d.58.1.4 38995 1a22A 180 5.63e+01 1huw a.26.1.1 16833 1sw5B 275 5.67e+01 c.94.1.1 106070 1wveC 80 5.68e+01 1tz9A 367 5.86e+01 c.1.15.6 107466 2gn5 87 6.04e+01 1gvp b.40.4.7 25386 1dlc 584 6.13e+01 1ciy b.18.1.3,b.77.2.1,f.1.3.1 23719,27976,43391 1irsA 112 6.16e+01 1qqgA b.55.1.2 26991 1vmeA 410 6.21e+01 c.23.5.1,d.157.1.3 108893,108894 2sniI 83 6.28e+01 2sniI d.40.1.1 38573 1e53A 59 6.40e+01 1e53A g.49.1.2 45356 1ae3 86 6.45e+01 1gvp b.40.4.7 25381 1duxC 94 6.56e+01 1awcA a.4.5.21 16170 1ylxA 103 6.64e+01 1mo1A 87 6.64e+01 d.94.1.1 91363 1tyyA 339 6.71e+01 1mak 113 6.73e+01 8fabA b.1.1.1 19825 1qf8A 182 6.96e+01 1qf8A g.41.4.1 45212 1nciA 110 6.97e+01 1edhA b.1.6.1 22191 1nwaA 203 7.06e+01 d.58.28.1 86295 1semA 58 7.16e+01 1ckaA b.34.2.1 24544 1fmk 452 7.17e+01 1fmk b.34.2.1,d.93.1.1,d.144.1.7 24511,40436,41690 1yjmA 110 7.20e+01 1gvp 87 7.26e+01 1gvp b.40.4.7 25369 1rxwA 336 7.32e+01 a.60.7.1,c.120.1.2 98059,98060 1dixA 208 7.34e+01 1bk7A d.124.1.1 41122 1mexH 215 7.44e+01 b.1.1.1,b.1.1.2 91257,91258 1ju5A 109 7.48e+01 d.93.1.1 77173 1ncg 110 7.63e+01 1edhA b.1.6.1 22193 1p2zA 968 7.64e+01 b.121.2.2,b.121.2.2 93962,93963 1dlfL 113 7.71e+01 8fabA b.1.1.1 20382 1rtu 114 7.80e+01 9rnt d.1.1.4 36139 2brfA 110 7.84e+01 1a5fH 217 7.85e+01 1igtB b.1.1.1,b.1.1.2 20303,21295 1vqb 87 7.90e+01 1gvp b.40.4.7 25370 1rjcA 137 7.97e+01 1qpbA 563 8.00e+01 1zpdA c.31.1.3,c.36.1.5,c.36.1.9 31739,31781,31782 1f3z 161 8.00e+01 1gpr b.84.3.1 28273 1j24A 143 8.04e+01 c.52.1.20 84008 1jud 232 8.20e+01 1qq5A c.108.1.1 43325 1diiC 80 8.27e+01 1diiC a.3.1.1 15925 1qhlA 227 8.31e+01 1qhlA c.37.1.12 32382 1um0A 365 8.39e+01 d.258.1.1 107942 2fdsA 352 8.40e+01 1lopA 164 8.40e+01 2cpl b.62.1.1 27510 1z60A 59 8.42e+01 1kz8A 337 8.58e+01 e.7.1.1 77633 1ae2 87 8.59e+01 1gvp b.40.4.7 25382 1ypvA 313 8.60e+01 1aonO 97 8.66e+01 b.35.1.1 24642 1x1gA 129 8.82e+01 1mjhA 162 8.97e+01 1mjhA c.26.2.4 31639