Best Alignments for T0340

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1g9oA/T0340-1g9oA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1g9oA/T0340-1g9oA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.7596e-181.23e-64 1pdr b.36.1.1
2fe5A/T0340-2fe5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2fe5A/T0340-2fe5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.2683e-175.80e-56
1tp5A/T0340-1tp5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1tp5A/T0340-1tp5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.3388e-176.15e-58
2fneA/T0340-2fneA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2fneA/T0340-2fneA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.3820e-171.16e-59
2fcfA/T0340-2fcfA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2fcfA/T0340-2fcfA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.5940e-165.49e-55
1qavA/T0340-1qavA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1qavA/T0340-1qavA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.5798e-162.24e-56 1qauA b.36.1.1
2f5yA/T0340-2f5yA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2f5yA/T0340-2f5yA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.9404e-149.57e-57
1wf7A/T0340-1wf7A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1wf7A/T0340-1wf7A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.2721e-145.76e-45
2f0aA/T0340-2f0aA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2f0aA/T0340-2f0aA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 9.7554e-141.41e-45
1fc6A/T0340-1fc6A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1fc6A/T0340-1fc6A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.9368e-093.34e-29 1fc6A b.36.1.3
c.14.1.2

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001