# List of top-scoring protein chains for t06-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2fneA 117 9.85e-18 1g9oA 91 1.04e-17 1pdr b.36.1.1 60400 2fe5A 94 7.03e-17 1tp5A 119 1.08e-16 2fcfA 103 1.19e-16 1qavA 90 1.21e-15 1qauA b.36.1.1 24777 1n7eA 97 6.59e-15 b.36.1.1 91691 1n7fA 97 7.44e-15 b.36.1.1 91692 1ihjA 98 8.07e-15 1pdr b.36.1.1 62382 2f5yA 91 8.72e-15 1qauA 112 1.19e-14 1qauA b.36.1.1 24779 1q3oA 109 2.27e-14 b.36.1.1 95700 2f0aA 98 2.97e-14 1wf7A 103 3.80e-14 1mfgA 95 6.80e-14 b.36.1.1 79043 1kwaA 88 1.74e-13 1kwaA b.36.1.1 24772 1nf3C 128 2.64e-13 b.36.1.1 85596 1r6jA 82 6.88e-13 b.36.1.1 97151 1fc6A 388 1.14e-08 1fc6A b.36.1.3,c.14.1.2 64738,64739 1te0A 318 1.07e-07 1lcyA 325 1.94e-07 b.36.1.4,b.47.1.1 73834,73835 1y8tA 324 2.73e-06 2bh4X 134 4.17e-01 1vpqA 273 4.70e-01 1jhfA 202 9.36e-01 a.4.5.2,b.87.1.1 63057,63058 1dxrH 258 9.40e-01 6prcH b.41.1.1,f.23.10.1 25456,43433 1xewX 182 1.29e+00 1reqB 637 1.37e+00 1reqB c.1.19.1,c.23.6.1 29621,31248 1o6dA 163 1.56e+00 c.116.1.3 92567 3tmkA 216 1.73e+00 3tmkA c.37.1.1 31920 2a6tA 271 1.85e+00 1bx4A 345 2.15e+00 1bx4A c.72.1.1 34935 1js8A 394 2.31e+00 a.86.1.1,b.112.1.1 67219,67220 1rypH 205 2.49e+00 d.153.1.4 41876 1koe 172 2.50e+00 1koe d.169.1.5 42448 1t6t1 118 2.51e+00 2cw8A 537 2.79e+00 1to2I 64 3.06e+00 1zq9A 285 3.09e+00 1cq3A 233 3.11e+00 1cq3A b.27.1.1 23923 1mzbA 136 3.92e+00 a.4.5.42 91497 1fm0E 150 4.14e+00 1fmaE d.41.5.1 38629 1dg6A 191 4.20e+00 1d4vB b.22.1.1 23883 1qw2A 102 4.38e+00 d.249.1.1 96456 1l3iA 192 4.46e+00 c.66.1.22 77676 2b4aA 138 4.55e+00 2f51A 118 4.61e+00 2aefA 234 4.64e+00 1ti6A 875 4.64e+00 b.52.2.2,c.81.1.1 106974,106975 1evlA 401 4.72e+00 1qf6A c.51.1.1,d.104.1.1 33202,40751 1l1dA 152 4.74e+00 b.88.1.3 73452 1pk1B 89 4.90e+00 1z5yE 149 5.25e+00 1uc2A 481 5.30e+00 d.261.1.1 99161 2bw3A 534 5.51e+00 2bhoA 130 5.74e+00 1gjjA 168 5.82e+00 a.140.1.1,a.140.1.1 83291,83292 1a8y 367 5.89e+00 1a8y c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 1sflA 238 6.21e+00 1vj0A 380 6.33e+00 b.35.1.2,c.2.1.1 100786,100787 1nmeA 146 6.74e+00 c.17.1.1 85874 1rxdA 159 6.88e+00 1kw4A 89 7.04e+00 a.60.1.2 73077 1zhvA 134 7.57e+00 1u8vA 490 7.90e+00 2bsjA 133 7.93e+00 1h05A 146 8.06e+00 c.23.13.1 76433 2c5qA 240 8.71e+00 2aa4A 289 8.76e+00 2bikB 313 9.04e+00 1rrmA 386 9.48e+00 e.22.1.2 105081 1jvwA 167 9.60e+00 d.26.1.1 71907 1yloA 348 9.79e+00 1unkA 87 9.90e+00 1cei a.28.2.1 16935 2c9wA 169 9.93e+00 1csh 435 1.01e+01 1csh a.103.1.1 18880 1qhlA 227 1.03e+01 1qhlA c.37.1.12 32382 1rxwA 336 1.05e+01 a.60.7.1,c.120.1.2 98059,98060 1vheA 373 1.07e+01 b.49.3.1,c.56.5.4 100669,100670 1k4mA 213 1.09e+01 c.26.1.3 77258 1rm6B 324 1.13e+01 1h6kA 757 1.14e+01 a.118.1.14,a.118.1.14,a.118.1.14 60675,60676,60677 1rwzA 245 1.21e+01 d.131.1.2,d.131.1.2 98005,98006 1nkqA 259 1.21e+01 d.177.1.1 103862 1uc8A 280 1.29e+01 c.30.1.6,d.142.1.7 99165,99166 1h9oA 112 1.31e+01 1qadA d.93.1.1 60837 1n0qA 93 1.31e+01 k.37.1.1 79754 1uh5A 329 1.39e+01 c.2.1.2 107840 2bwbA 46 1.40e+01 1pueE 89 1.40e+01 1awcA a.4.5.21 16165 1um0A 365 1.40e+01 d.258.1.1 107942 2ahqA 76 1.43e+01 1y96A 86 1.44e+01 1zh1A 163 1.44e+01 1sixA 174 1.47e+01 b.85.4.1 98892 2brfA 110 1.49e+01 1ypvA 313 1.57e+01 1twfC 318 1.61e+01 1yeyA 444 1.62e+01 1h3gA 601 1.62e+01 b.1.18.2,b.71.1.1,c.1.8.1 90594,90595,90596 1yb2A 275 1.64e+01 1v5iB 76 1.66e+01 2napA 723 1.67e+01 2napA b.52.2.2,c.81.1.1 26926,35334 1b65A 375 1.88e+01 1b65A d.154.1.1 42020 1q7hA 153 1.88e+01 b.122.1.1,d.17.6.2 96042,96043 1r0vA 305 1.89e+01 c.52.2.1,c.52.2.1,d.75.1.1 96742,96743,96744 1hssA 124 1.91e+01 1bea a.52.1.2 17819 1xewY 172 1.94e+01 2bkfA 87 1.96e+01 2a8eA 220 1.99e+01 1sknP 92 2.00e+01 1sknP a.37.1.1 17127 1rypL 212 2.02e+01 d.153.1.4 41880 1viaA 175 2.06e+01 c.37.1.2 100754 2axcA 264 2.07e+01 1fgkA 310 2.10e+01 1fgkA d.144.1.7 41693 1qb7A 236 2.18e+01 1qb7A c.61.1.1 34087 1rz2A 254 2.19e+01 b.100.1.1 105130 1wdiA 345 2.26e+01 1r6xA 395 2.27e+01 b.122.1.3,c.26.1.5 97167,97168 1ql3A 99 2.28e+01 1ycc a.3.1.1 15822 1wqsA 173 2.31e+01 2cc0A 195 2.32e+01 1wi9A 72 2.35e+01 1sfdA 105 2.40e+01 b.6.1.1 105480 1a62 130 2.43e+01 1a62 a.140.3.1,b.40.4.5 64708,64709 1zn8A 180 2.47e+01 2gk4A 232 2.48e+01 2d4pA 141 2.48e+01 1bb9 115 2.55e+01 1bb9 b.34.2.1 24554 1t3qB 788 2.56e+01 d.41.1.1,d.133.1.1 106369,106370 1fxkC 133 2.59e+01 1fxkC a.2.5.1 15702 1oi2A 366 2.59e+01 c.119.1.2 103802 1ojhA 65 2.63e+01 a.214.1.1 103976 1qyaA 307 2.64e+01 d.21.1.2,d.21.1.2 104653,104654 1at0 145 2.75e+01 1at0 b.86.1.1 28374 2fi0A 81 2.80e+01 1sw5A 275 2.80e+01 c.94.1.1 106069 1unlD 208 2.80e+01 1ufkA 254 2.85e+01 c.66.1.39 99340 1mvoA 136 2.87e+01 c.23.1.1 79513 1fdr 248 2.89e+01 1fdr b.43.4.2,c.25.1.1 25653,31543 1zrjA 50 2.94e+01 1x3mA 415 2.94e+01 1yvcA 70 2.98e+01 1cliA 345 2.99e+01 1cliA d.79.4.1,d.139.1.1 39816,41459 1mkmA 249 3.01e+01 a.4.5.33,d.110.2.2 79242,79243 1sw5B 275 3.01e+01 c.94.1.1 106070 1k8wA 327 3.05e+01 b.122.1.1,d.265.1.2 83094,90388 1dvoA 152 3.07e+01 1dvoA a.136.1.1 19623 1s3aA 102 3.14e+01 2c8mA 262 3.17e+01 1nykA 165 3.19e+01 b.33.1.1 86408 1w9gA 104 3.22e+01 1ztdA 133 3.25e+01 1fxlA 167 3.27e+01 1b7fA d.58.7.1,d.58.7.1 39183,39184 1z08A 170 3.31e+01 1ci9A 392 3.32e+01 e.3.1.1 64767 1p0yA 444 3.33e+01 a.166.1.1,b.85.7.3 87654,87655 1g2hA 61 3.34e+01 1g2hA a.4.1.12 60224 1zxxA 319 3.36e+01 1yi9A 309 3.39e+01 1h8eA 510 3.47e+01 1skyB a.69.1.1,b.49.1.1,c.37.1.11 60738,60739,60740 1rd5A 262 3.47e+01 1nz0A 118 3.49e+01 d.14.1.2 86433 1xv2A 237 3.56e+01 1xsvA 113 3.61e+01 1iruK 201 3.61e+01 d.153.1.4 71362 1ucdA 190 3.61e+01 d.124.1.1 107767 1qtqA 553 3.62e+01 1gtrA b.53.1.2,c.26.1.1 26940,31579 1zavA 180 3.65e+01 1fr3A 67 3.65e+01 1fr3A b.40.6.1 25436 1lba 146 3.70e+01 1lba d.118.1.1 41062 2btvA 901 3.71e+01 2btvA e.28.1.1 43376 1xebA 150 3.72e+01 1t9iA 163 3.75e+01 1ehiA 377 3.77e+01 1iow c.30.1.2,d.142.1.1 31716,41484 1z3eA 132 3.80e+01 2b4lA 268 3.80e+01 1iz5A 249 3.88e+01 d.131.1.2,d.131.1.2 83834,83835 1q67A 231 3.95e+01 b.55.1.7 95960 1ryp1 222 4.00e+01 1ryp1 1rlhA 173 4.02e+01 d.256.1.1 97646 1yllA 200 4.12e+01 1zpwX 90 4.32e+01 2bneA 241 4.33e+01 1b43A 340 4.41e+01 1a76 a.60.7.1,c.120.1.2 18092,33362 1kk1A 410 4.44e+01 b.43.3.1,b.44.1.1,c.37.1.8 72634,72635,72636 1eo6A 117 4.45e+01 1eo6A d.15.1.3 37609 1wkvA 389 4.52e+01 2csbA 519 4.58e+01 1r1qA 100 4.60e+01 d.93.1.1 104763 2a2pA 129 4.67e+01 1pswA 348 4.68e+01 c.87.1.7 88287 1dfuP 94 4.75e+01 1dfuP b.53.1.1 26936 2covD 104 4.82e+01 1fo8A 343 4.84e+01 1foaA c.68.1.10 59927 1rutX 188 4.85e+01 1sv6A 269 4.85e+01 d.177.1.1 106043 1sdjA 310 4.86e+01 d.21.1.2,d.21.1.2 98807,98808 1vekA 84 4.86e+01 1z1dA 103 4.87e+01 2rslA 140 4.92e+01 2rslA c.53.1.1 33345 1iukA 140 4.93e+01 c.2.1.8 83712 2ck3A 510 4.93e+01 1g7sA 594 4.96e+01 1g7rA b.43.3.1,b.43.3.1,c.20.1.1,c.37.1.8 25712,25713,31032,32147 1yqfA 203 5.02e+01 1wvhA 134 5.14e+01 1zuoA 186 5.14e+01 1wolA 122 5.15e+01 2abwA 227 5.20e+01 1x6vA 630 5.20e+01 1vkiA 181 5.29e+01 d.116.1.1 108664 1idk 359 5.35e+01 1qcxA b.80.1.2 28025 2fjlA 150 5.40e+01 1flmA 122 5.45e+01 1axj b.45.1.1 25747 1p42A 270 5.47e+01 d.14.1.7,d.14.1.7 87754,87755 1jpaA 312 5.52e+01 d.144.1.7 67011 1yf3A 259 5.53e+01 1bouA 139 5.53e+01 1bouA a.88.1.1 18521 2f5tX 233 5.57e+01 2fsxA 148 5.63e+01 2as0A 396 5.66e+01 1t3iA 420 5.66e+01 c.67.1.3 106354 1tz9A 367 5.74e+01 c.1.15.6 107466 1xvqA 175 5.83e+01 1kqqA 139 5.84e+01 a.4.3.1 72885 1p99A 295 5.93e+01 c.94.1.1 94384 1iq8A 582 5.95e+01 c.1.20.1,b.122.1.1,d.17.6.1 71270,83074,83075 1v9mA 323 5.98e+01 f.40.1.1 100543 1euwA 152 6.05e+01 1dupA b.85.4.1 28349 1l2mA 118 6.07e+01 d.89.1.4 77657 1ex2A 189 6.15e+01 1ex2A c.51.4.2 33225 1kgdA 180 6.19e+01 c.37.1.1 68582 1cc8A 73 6.24e+01 1cc8A d.58.17.1 39343 1id2A 106 6.24e+01 1aac b.6.1.1 62288 1o8bA 219 6.36e+01 c.124.1.4,d.58.40.1 81180,81181 1uslA 170 6.36e+01 c.121.1.1 99871 1z96A 40 6.38e+01 1k1vA 41 6.42e+01 a.37.1.1 71999 2g7zA 282 6.47e+01 1y8oB 128 6.54e+01 1d1gA 168 6.56e+01 1d1gA c.71.1.1 34889 1xv5A 401 6.57e+01 1yfuA 174 6.65e+01 2evwX 166 6.65e+01 1ebfA 358 6.75e+01 1ebuA c.2.1.3,d.81.1.2 30033,39948 1wveC 80 6.76e+01 1ccwB 483 6.79e+01 1cb7B c.1.19.2 29646 1oeyA 83 6.79e+01 d.15.2.2 92800 1d4oA 184 6.85e+01 1d4oA c.31.1.4 31748 1p4oA 322 6.86e+01 d.144.1.7 87775 1b8aA 438 6.92e+01 1b8aA b.40.4.1,d.104.1.1 25244,40765 1tmy 120 6.95e+01 1dbwA c.23.1.1 31083 1m3uA 264 6.96e+01 c.1.12.8 84784 1wj9A 211 6.99e+01 1nuuA 252 7.06e+01 c.26.1.3 86209 1jdpA 441 7.06e+01 c.93.1.1 62906 2bpsA 81 7.07e+01 1vqvA 306 7.11e+01 1fpzA 212 7.11e+01 1fpzA c.45.1.1 59976 1qkkA 155 7.12e+01 1dbwA c.23.1.1 31104 1l0bA 229 7.16e+01 c.15.1.3,c.15.1.3 73391,73392 1pht 85 7.17e+01 1ckaA b.34.2.1 24483 1zelA 298 7.27e+01 1lvaA 258 7.27e+01 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 1shxA 138 7.27e+01 1jjtA 228 7.30e+01 1a7tA d.157.1.1 63139 1ej2A 181 7.32e+01 1f9aA c.26.1.3 59414 1f9zA 135 7.36e+01 1qipA d.32.1.1 38484 2b3hA 329 7.49e+01 1xbbA 291 7.63e+01 1u2cA 246 7.77e+01 b.1.6.2,d.272.1.1 107610,107611 1h3fA 432 7.79e+01 c.26.1.1,d.66.1.4 76631,76632 1g5tA 196 7.81e+01 1g5rA c.37.1.11 32366 1fhgA 154 7.85e+01 1tlk b.1.1.4 21706 1i1qB 192 7.92e+01 1qdlB c.23.16.1 61544 1eceA 358 7.92e+01 1eceA c.1.8.3 28813 1iscA 192 8.02e+01 1avmA a.2.11.1,d.44.1.1 15733,38726 1vs0A 310 8.04e+01 1ghpA 258 8.10e+01 1btl e.3.1.1 60520 1y0bA 197 8.13e+01 2h21A 440 8.18e+01 1tr8A 102 8.22e+01 1srrA 124 8.23e+01 1dz3A c.23.1.1 31110 2b18A 164 8.24e+01 1ppjB 439 8.24e+01 d.185.1.1,d.185.1.1 104254,104255 1fkmA 396 8.25e+01 1fkmA a.69.2.1,a.69.2.1 18315,18316 1tif 78 8.28e+01 1tif d.15.8.1 37836 3c2c 112 8.28e+01 1ycc a.3.1.1 15885 1wlsA 328 8.31e+01 1m8jA 181 8.32e+01 c.26.1.3 84875 1a8l 226 8.44e+01 1a8l c.47.1.2,c.47.1.2 32777,32778 2anuA 255 8.44e+01 1i4jA 110 8.48e+01 d.55.1.1 76734 2a1fA 247 8.52e+01 2b6nA 278 8.62e+01 1iqqA 200 8.64e+01 d.124.1.1 66274 1obfO 335 8.65e+01 c.2.1.3,d.81.1.1 86768,86769 1xpjA 126 8.72e+01 1wvqA 167 8.78e+01 1qynA 153 8.88e+01 d.33.1.1 96597 1gky 187 8.93e+01 1gky c.37.1.1 31839