# List of top-scoring protein chains for t06-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1g9oA 91 3.57e-17 1pdr b.36.1.1 60400 2fe5A 94 4.05e-16 2fcfA 103 6.44e-16 1tp5A 119 7.00e-16 2fneA 117 4.18e-15 1qavA 90 7.98e-15 1qauA b.36.1.1 24777 1n7eA 97 1.70e-14 b.36.1.1 91691 1n7fA 97 1.74e-14 b.36.1.1 91692 1q3oA 109 1.78e-14 b.36.1.1 95700 2f5yA 91 5.46e-13 1wf7A 103 5.86e-13 2f0aA 98 6.14e-13 1kwaA 88 6.23e-13 1kwaA b.36.1.1 24772 1qauA 112 1.21e-12 1qauA b.36.1.1 24779 1ihjA 98 1.83e-12 1pdr b.36.1.1 62382 1nf3C 128 2.89e-12 b.36.1.1 85596 1mfgA 95 4.62e-12 b.36.1.1 79043 1r6jA 82 6.45e-12 b.36.1.1 97151 1fc6A 388 4.72e-08 1fc6A b.36.1.3,c.14.1.2 64738,64739 1lcyA 325 5.44e-06 b.36.1.4,b.47.1.1 73834,73835 1te0A 318 6.06e-06 1y8tA 324 2.52e-05 1zn8A 180 3.53e-02 1fxlA 167 1.33e-01 1b7fA d.58.7.1,d.58.7.1 39183,39184 1bx4A 345 1.51e-01 1bx4A c.72.1.1 34935 1h72C 296 8.11e-01 d.14.1.5,d.58.26.1 60712,60713 1qb7A 236 8.80e-01 1qb7A c.61.1.1 34087 1vpqA 273 1.01e+00 1xv5A 401 2.32e+00 1q52A 314 2.75e+00 c.14.1.3 95846 1qqqA 264 3.13e+00 1bkpA d.117.1.1 40931 2g8oA 264 3.17e+00 2g8mA 264 3.21e+00 1yg9A 330 3.21e+00 1xx6A 191 3.21e+00 1lh0A 213 3.54e+00 c.61.1.1 73896 1g6sA 427 3.61e+00 1eps d.68.2.2 39584 1x3mA 415 3.63e+00 1rypB 250 4.16e+00 1rypB d.153.1.4 41933 1fdr 248 4.81e+00 1fdr b.43.4.2,c.25.1.1 25653,31543 1a8y 367 4.96e+00 1a8y c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 1p35A 299 4.98e+00 1p35A b.28.1.1 23925 1mkmA 249 5.91e+00 a.4.5.33,d.110.2.2 79242,79243 1o6dA 163 6.02e+00 c.116.1.3 92567 1cliA 345 6.26e+00 1cliA d.79.4.1,d.139.1.1 39816,41459 1cs0A 1073 6.39e+00 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18558,31487,31673,31674,41518,41519 1zxxA 319 6.50e+00 2bw3A 534 6.54e+00 1yloA 348 6.86e+00 1mo1A 87 7.25e+00 d.94.1.1 91363 2fa1A 160 7.76e+00 1wlsA 328 7.91e+00 1h3gA 601 7.98e+00 b.1.18.2,b.71.1.1,c.1.8.1 90594,90595,90596 1zm8A 259 8.52e+00 1a9xA 1058 8.68e+00 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18550,31479,31657,31658,41502,41503 1fjrA 195 8.82e+00 1fjrA b.102.1.1 59855 1r31A 428 8.82e+00 d.58.20.1,d.179.1.1 96897,96898 1uc2A 481 8.90e+00 d.261.1.1 99161 1ti6A 875 8.96e+00 b.52.2.2,c.81.1.1 106974,106975 1g2qA 187 9.55e+00 c.61.1.1 65117 1l1dA 152 1.02e+01 b.88.1.3 73452 1bu6O 501 1.07e+01 1glcG c.55.1.4,c.55.1.4 33499,33500 1f28A 297 1.09e+01 1bkpA d.117.1.1 59608 1g57A 217 1.10e+01 1g57A d.115.1.2 60253 2cw8A 537 1.11e+01 1vheA 373 1.20e+01 b.49.3.1,c.56.5.4 100669,100670 1o63A 219 1.22e+01 c.94.1.1 92540 2bh8A 101 1.24e+01 1fr3A 67 1.27e+01 1fr3A b.40.6.1 25436 1se8A 301 1.29e+01 b.40.4.3 105448 1t6t1 118 1.42e+01 1jalA 363 1.45e+01 c.37.1.8,d.15.10.2 84138,84139 1b25A 619 1.45e+01 1b25A a.110.1.1,d.152.1.1 19044,41796 1eu1A 780 1.48e+01 1dmr b.52.2.2,c.81.1.1 26903,35311 1fsgA 233 1.53e+01 1qk3A c.61.1.1 34029 1uh5A 329 1.55e+01 c.2.1.2 107840 1i1wA 303 1.62e+01 c.1.8.3 76732 1w78A 422 1.68e+01 2d4pA 141 1.74e+01 1efvA 315 1.78e+01 1efvA c.26.2.3,c.31.1.2 31633,31728 1y96A 86 1.81e+01 1zq9A 285 1.81e+01 1j24A 143 1.91e+01 c.52.1.20 84008 1qgdA 662 1.91e+01 c.36.1.6,c.36.1.10,c.48.1.1 88367,88368,88369 2b8tA 223 1.92e+01 1b63A 333 1.92e+01 1b63A d.14.1.3,d.122.1.2 37566,41107 1csh 435 2.10e+01 1csh a.103.1.1 18880 1vchA 175 2.12e+01 1rypL 212 2.20e+01 d.153.1.4 41880 1l1qA 186 2.30e+01 c.61.1.1 77653 1cq3A 233 2.30e+01 1cq3A b.27.1.1 23923 1rwzA 245 2.47e+01 d.131.1.2,d.131.1.2 98005,98006 1b0uA 262 2.48e+01 1b0uA c.37.1.12 32370 1o7fA 469 2.50e+01 a.4.5.31,b.82.3.2,b.82.3.2 81131,81132,81133 1ecfA 504 2.69e+01 1ecfB c.61.1.1,d.153.1.1 34053,41820 2f6rA 281 2.72e+01 2bsyA 278 2.72e+01 1vkmA 297 2.77e+01 c.138.1.1 108670 2az4A 429 2.77e+01 1i52A 236 2.79e+01 1i52A c.68.1.13 61767 1jhfA 202 2.82e+01 a.4.5.2,b.87.1.1 63057,63058 1t0hB 224 2.84e+01 c.37.1.1 106208 1dmgA 225 2.98e+01 1dmgA c.22.1.1 31036 1u5vA 273 3.10e+01 1u9yA 284 3.18e+01 1qexA 288 3.25e+01 1qexA b.32.1.1 24425 1vdmA 153 3.26e+01 2bikB 313 3.32e+01 2rslA 140 3.34e+01 2rslA c.53.1.1 33345 1xebA 150 3.39e+01 1c9oA 66 3.42e+01 1mjc b.40.4.5 25325 1ypvA 313 3.43e+01 1ugmA 125 3.46e+01 d.15.1.3 107827 1nepA 130 3.56e+01 b.1.18.7 80440 2aamA 309 3.66e+01 1uarA 285 3.70e+01 c.46.1.2,c.46.1.2 107762,107763 1earA 147 3.80e+01 b.107.1.1,d.58.38.1 64875,64876 1r62A 160 3.81e+01 d.122.1.3 104816 1qkkA 155 3.88e+01 1dbwA c.23.1.1 31104 2a9gA 418 3.90e+01 1jmuB 666 3.91e+01 1i36A 264 3.92e+01 a.100.1.8,c.2.1.6 71108,71109 1vj0A 380 3.96e+01 b.35.1.2,c.2.1.1 100786,100787 1ta3B 303 3.96e+01 c.1.8.3 106732 1q1rA 431 4.01e+01 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 1bg4 302 4.01e+01 1taxA c.1.8.3 28806 1l0bA 229 4.03e+01 c.15.1.3,c.15.1.3 73391,73392 1vraB 215 4.07e+01 1wl4A 397 4.08e+01 2ghpA 292 4.10e+01 1koe 172 4.18e+01 1koe d.169.1.5 42448 1obfO 335 4.19e+01 c.2.1.3,d.81.1.1 86768,86769 1uthA 315 4.33e+01 c.94.1.1 108032 1kw4A 89 4.45e+01 a.60.1.2 73077 1vplA 256 4.46e+01 1i6pA 220 4.54e+01 1ddzA c.53.2.1 61848 1yqfA 203 4.76e+01 1sw5A 275 4.83e+01 c.94.1.1 106069 1y0yA 353 4.84e+01 1xdnA 277 4.90e+01 1vcaA 202 4.93e+01 1vcaA b.1.1.3,b.1.1.4 21649,21685 1p7tA 731 5.09e+01 c.1.13.1 94319 2cyjA 118 5.10e+01 1euwA 152 5.33e+01 1dupA b.85.4.1 28349 1ep3B 262 5.39e+01 1ep2B b.43.4.2,c.25.1.3 25664,31554 2bh4X 134 5.47e+01 1v93A 296 5.55e+01 c.1.23.1 100532 1ueoA 63 5.55e+01 j.107.1.1 99269 2ckiA 262 5.58e+01 1ojhA 65 5.61e+01 a.214.1.1 103976 2bb3A 221 5.63e+01 1u5hA 273 5.73e+01 1g5bA 221 5.73e+01 1g5bA d.159.1.3 60261 1y0bA 197 5.79e+01 2fvgA 340 5.82e+01 1gvhA 396 5.84e+01 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 1x38A 602 5.87e+01 2bhoA 130 5.88e+01 1t3qB 788 5.92e+01 d.41.1.1,d.133.1.1 106369,106370 1bvoA 175 6.00e+01 1a3qA b.2.5.3 22457 1kuuA 202 6.00e+01 d.153.2.1 73019 1w2xA 758 6.02e+01 c.14.1.4,c.14.1.4 109134,109135 2b9hA 353 6.06e+01 1vr0A 247 6.08e+01 1f1xA 322 6.09e+01 d.32.1.3,d.32.1.3 83208,83209 2fr1A 486 6.11e+01 1g6hA 257 6.22e+01 1gajA c.37.1.12 60318 1gpjA 404 6.24e+01 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1siqA 392 6.25e+01 a.29.3.1,e.6.1.1 105585,105586 1zsyA 357 6.25e+01 1o57A 291 6.26e+01 a.4.5.40,c.61.1.1 92483,92484 1oi7A 288 6.34e+01 c.2.1.8,c.23.4.1 87049,87050 1vjnA 220 6.47e+01 d.157.1.4 100825 1rurH 218 6.47e+01 b.1.1.1,b.1.1.2 97879,97880 1e7uA 961 6.53e+01 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19147,23182,37630,41710 2cq2A 114 6.53e+01 1g8aA 227 6.69e+01 c.66.1.3 90506 1yq5A 144 6.69e+01 2faoA 309 6.71e+01 1cozA 129 6.80e+01 1cozA c.26.1.2 31598 1pmy 123 6.82e+01 1bqk b.6.1.1 22888 1d7oA 297 6.83e+01 1enp c.2.1.2 29907 1brt 277 6.88e+01 1brt c.69.1.12 34699 1lvaA 258 6.91e+01 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 2ajuH 219 6.99e+01 1dxrH 258 7.09e+01 6prcH b.41.1.1,f.23.10.1 25456,43433 1vhxA 150 7.14e+01 c.55.3.8 100712 1fxkC 133 7.28e+01 1fxkC a.2.5.1 15702 2bryA 497 7.31e+01 1dpe 507 7.39e+01 1dpe c.94.1.1 35799 2fvtA 135 7.39e+01 1i9zA 347 7.43e+01 1i9yA d.151.1.2 62102 1z2kA 109 7.47e+01 1js8A 394 7.51e+01 a.86.1.1,b.112.1.1 67219,67220 1w94A 156 7.54e+01 2d1eA 248 7.54e+01 1wrvA 308 7.55e+01 1idk 359 7.55e+01 1qcxA b.80.1.2 28025 2fl4A 149 7.56e+01 1oc7A 364 7.56e+01 c.6.1.1 86794 1v0aA 178 7.57e+01 2evwX 166 7.61e+01 1t9bA 677 7.65e+01 1n0qA 93 7.73e+01 k.37.1.1 79754 1o12A 376 7.77e+01 b.92.1.5,c.1.9.10 80758,80759 1rf6A 427 7.78e+01 d.68.2.2 97366 1l2mA 118 7.79e+01 d.89.1.4 77657 1s29A 92 7.81e+01 a.4.5.46 98373 2b4aA 138 7.81e+01 1yllA 200 7.85e+01 1odkA 235 7.94e+01 c.56.2.1 86863 1y791 680 8.04e+01 1wkvA 389 8.06e+01 1zpwX 90 8.20e+01 1vqqA 646 8.22e+01 1xm7A 195 8.24e+01 1h05A 146 8.32e+01 c.23.13.1 76433 1zkpA 268 8.36e+01 2brfA 110 8.45e+01 1eceA 358 8.56e+01 1eceA c.1.8.3 28813 1qfjA 232 8.57e+01 1qfjA b.43.4.2,c.25.1.1 25655,31545 2fi9A 128 8.58e+01 1ppjB 439 8.66e+01 d.185.1.1,d.185.1.1 104254,104255 2bsjA 133 8.83e+01