# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2fneA 117 1.46e-16 1g9oA 91 2.10e-16 1pdr b.36.1.1 60400 1tp5A 119 1.53e-15 2fe5A 94 1.68e-15 2fcfA 103 5.31e-15 1qavA 90 3.08e-14 1qauA b.36.1.1 24777 1n7eA 97 6.03e-14 b.36.1.1 91691 1qauA 112 2.65e-13 1qauA b.36.1.1 24779 1wf7A 103 2.76e-13 1n7fA 97 3.27e-13 b.36.1.1 91692 1ihjA 98 3.35e-13 1pdr b.36.1.1 62382 1q3oA 109 4.30e-13 b.36.1.1 95700 2f5yA 91 1.84e-12 2f0aA 98 2.19e-12 1mfgA 95 2.78e-12 b.36.1.1 79043 1nf3C 128 7.35e-12 b.36.1.1 85596 1kwaA 88 1.17e-11 1kwaA b.36.1.1 24772 1r6jA 82 5.73e-10 b.36.1.1 97151 1fc6A 388 1.45e-06 1fc6A b.36.1.3,c.14.1.2 64738,64739 1lcyA 325 3.09e-06 b.36.1.4,b.47.1.1 73834,73835 1te0A 318 5.91e-06 1y8tA 324 8.94e-04 2bh4X 134 1.90e-01 1jhfA 202 1.02e+00 a.4.5.2,b.87.1.1 63057,63058 1x6vA 630 1.33e+00 1bx4A 345 1.54e+00 1bx4A c.72.1.1 34935 2b4aA 138 3.02e+00 1fxlA 167 3.33e+00 1b7fA d.58.7.1,d.58.7.1 39183,39184 2bikB 313 3.47e+00 1rm6A 769 3.73e+00 1t3qB 788 3.96e+00 d.41.1.1,d.133.1.1 106369,106370 1y96A 86 4.49e+00 1koe 172 4.70e+00 1koe d.169.1.5 42448 2a6tA 271 4.76e+00 1ql3A 99 4.80e+00 1ycc a.3.1.1 15822 1p35A 299 5.06e+00 1p35A b.28.1.1 23925 1cruA 454 6.00e+00 1c9uA b.68.2.1 27617 1zhvA 134 7.52e+00 1dxrH 258 7.77e+00 6prcH b.41.1.1,f.23.10.1 25456,43433 1xe0A 114 8.23e+00 1rwzA 245 8.57e+00 d.131.1.2,d.131.1.2 98005,98006 1a8y 367 8.77e+00 1a8y c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 2c2xA 281 9.08e+00 1sw5A 275 9.57e+00 c.94.1.1 106069 1p99A 295 1.01e+01 c.94.1.1 94384 2covD 104 1.03e+01 1dg6A 191 1.14e+01 1d4vB b.22.1.1 23883 1tz9A 367 1.15e+01 c.1.15.6 107466 1vpqA 273 1.15e+01 1rm6B 324 1.21e+01 1ihgA 370 1.40e+01 2cpl a.118.8.1,b.62.1.1 62380,62381 1sw5B 275 1.48e+01 c.94.1.1 106070 1pueE 89 1.62e+01 1awcA a.4.5.21 16165 1xdyA 298 1.65e+01 1sixA 174 1.68e+01 b.85.4.1 98892 1l1dA 152 1.82e+01 b.88.1.3 73452 2etxA 209 1.84e+01 1ti6A 875 1.95e+01 b.52.2.2,c.81.1.1 106974,106975 2rslA 140 1.97e+01 2rslA c.53.1.1 33345 1mo1A 87 2.01e+01 d.94.1.1 91363 1j24A 143 2.09e+01 c.52.1.20 84008 2c5qA 240 2.11e+01 1h3qA 140 2.14e+01 d.110.4.3 76652 1nvmA 345 2.26e+01 a.5.7.1,c.1.10.5 86249,86250 1xewY 172 2.30e+01 3c2c 112 2.30e+01 1ycc a.3.1.1 15885 1jjtA 228 2.38e+01 1a7tA d.157.1.1 63139 1xebA 150 2.41e+01 1y7rA 133 2.51e+01 2d4pA 141 2.59e+01 1nu4A 97 2.63e+01 d.58.7.1 80731 1dpe 507 2.66e+01 1dpe c.94.1.1 35799 2aa4A 289 2.67e+01 1iakA 199 2.70e+01 1iakA b.1.1.2,d.19.1.1 21625,38199 1qc7A 101 2.73e+01 1qc7A a.118.14.1 18456 1twfC 318 2.78e+01 1vs0A 310 2.78e+01 1wveC 80 2.79e+01 1kw4A 89 2.80e+01 a.60.1.2 73077 1b43A 340 2.84e+01 1a76 a.60.7.1,c.120.1.2 18092,33362 1yllA 200 2.86e+01 1ctqA 166 2.87e+01 1ctqA c.37.1.8 31965 1rxwA 336 2.89e+01 a.60.7.1,c.120.1.2 98059,98060 1p2zA 968 3.17e+01 b.121.2.2,b.121.2.2 93962,93963 1wqsA 173 3.17e+01 1r6xA 395 3.29e+01 b.122.1.3,c.26.1.5 97167,97168 1ypvA 313 3.31e+01 1qo0D 196 3.37e+01 1qo0D c.23.1.3 31125 1wvqA 167 3.37e+01 1nwaA 203 3.41e+01 d.58.28.1 86295 1kqqA 139 3.57e+01 a.4.3.1 72885 1j1vA 94 3.62e+01 a.4.12.2 83981 1pk1B 89 3.68e+01 1qynA 153 3.68e+01 d.33.1.1 96597 1z1dA 103 3.69e+01 1iz5A 249 3.87e+01 d.131.1.2,d.131.1.2 83834,83835 1qw2A 102 3.95e+01 d.249.1.1 96456 1lxjA 104 4.06e+01 d.58.48.1 84736 1p5vB 147 4.11e+01 b.2.3.2 87814 1yloA 348 4.12e+01 1c9oA 66 4.13e+01 1mjc b.40.4.5 25325 1s29A 92 4.25e+01 a.4.5.46 98373 1ksiA 642 4.32e+01 1ksiB b.30.2.1,d.17.2.1,d.17.2.1 24408,38043,38044 1rurH 218 4.33e+01 b.1.1.1,b.1.1.2 97879,97880 1y55X 126 4.34e+01 1a6cA 513 4.42e+01 1a6cA b.121.4.2,b.121.4.2,b.121.4.2 23296,23297,23298 1tvgA 153 4.43e+01 2evwX 166 4.55e+01 1se8A 301 4.56e+01 b.40.4.3 105448 1zj6A 187 4.58e+01 2cw8A 537 4.59e+01 2b3yA 888 4.74e+01 2brfA 110 4.80e+01 1wdiA 345 4.82e+01 1yvcA 70 4.88e+01 1o63A 219 5.04e+01 c.94.1.1 92540 1evlA 401 5.20e+01 1qf6A c.51.1.1,d.104.1.1 33202,40751 1ppfE 218 5.23e+01 1a7s b.47.1.2 26234 1l3iA 192 5.25e+01 c.66.1.22 77676 1qf8A 182 5.34e+01 1qf8A g.41.4.1 45212 2axcA 264 5.36e+01 1r61A 207 5.49e+01 c.8.8.1 97138 2cc0A 195 5.49e+01 1y7xA 113 5.57e+01 1to2I 64 5.58e+01 1hztA 190 5.69e+01 1i9aA d.113.1.2 61459 1zpwX 90 5.98e+01 1th7A 81 5.99e+01 2bkfA 87 6.07e+01 1reqB 637 6.10e+01 1reqB c.1.19.1,c.23.6.1 29621,31248 1zkkA 167 6.11e+01 1vheA 373 6.19e+01 b.49.3.1,c.56.5.4 100669,100670 1ne9A 335 6.35e+01 d.108.1.4,d.108.1.4 91839,91840 1eo6A 117 6.39e+01 1eo6A d.15.1.3 37609 1unkA 87 6.61e+01 1cei a.28.2.1 16935 2ck3A 510 6.70e+01 1jalA 363 6.71e+01 c.37.1.8,d.15.10.2 84138,84139 1ww7A 160 6.73e+01 1rz2A 254 6.82e+01 b.100.1.1 105130 1rss 151 6.86e+01 1rss a.75.1.1 18392 2fdsA 352 6.95e+01 1r0vA 305 6.99e+01 c.52.2.1,c.52.2.1,d.75.1.1 96742,96743,96744 1npuA 117 7.02e+01 b.1.1.1 92038 1thfD 253 7.08e+01 1thfD c.1.2.1 28535 1euwA 152 7.08e+01 1dupA b.85.4.1 28349 1qexA 288 7.12e+01 1qexA b.32.1.1 24425 2g7gA 213 7.15e+01 2bwfA 77 7.21e+01 1h9oA 112 7.22e+01 1qadA d.93.1.1 60837 1yi9A 309 7.24e+01 1yqfA 203 7.53e+01 2ajuH 219 7.82e+01 1js8A 394 8.08e+01 a.86.1.1,b.112.1.1 67219,67220 1kdj 102 8.09e+01 1plc b.6.1.1 22864 1yvoA 172 8.11e+01 1tbxA 99 8.17e+01 a.4.5.48 106748 1p32A 209 8.38e+01 1p32A d.25.1.1 38379 1g3qA 237 8.42e+01 1hyqA c.37.1.10 60237 1qahA 136 8.44e+01 d.79.1.1 96338 1a8l 226 8.45e+01 1a8l c.47.1.2,c.47.1.2 32777,32778 1t9iA 163 8.47e+01 2fuqA 747 8.53e+01 1i4jA 110 8.55e+01 d.55.1.1 76734 1qhlA 227 8.60e+01 1qhlA c.37.1.12 32382 1vj0A 380 8.70e+01 b.35.1.2,c.2.1.1 100786,100787 1sffA 426 8.71e+01 c.67.1.4 105482 1nz0A 118 8.95e+01 d.14.1.2 86433