Best Alignments for T0340

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1g9oA/T0340-1g9oA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1g9oA/T0340-1g9oA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.4037e-191.09e-64 1pdr b.36.1.1
2fe5A/T0340-2fe5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2fe5A/T0340-2fe5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.1817e-173.47e-57
1tp5A/T0340-1tp5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1tp5A/T0340-1tp5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.5638e-171.25e-57
2fneA/T0340-2fneA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2fneA/T0340-2fneA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.8398e-171.09e-58
2fcfA/T0340-2fcfA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2fcfA/T0340-2fcfA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.2555e-172.99e-54
1qavA/T0340-1qavA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1qavA/T0340-1qavA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.3630e-162.79e-56 1qauA b.36.1.1
2f5yA/T0340-2f5yA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2f5yA/T0340-2f5yA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.0675e-151.13e-55
1wf7A/T0340-1wf7A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1wf7A/T0340-1wf7A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 9.7773e-152.42e-46
2f0aA/T0340-2f0aA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2f0aA/T0340-2f0aA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.6790e-149.98e-46
1i16/T0340-1i16-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1i16/T0340-1i16-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 9.6200e-101.36e-36 1i16 b.36.1.2

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001