# List of top-scoring protein chains for t04-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1g9oA 91 2.15e-18 1pdr b.36.1.1 60400 2fe5A 94 1.88e-17 1tp5A 119 7.64e-17 2fcfA 103 8.04e-17 1be9A 119 8.57e-17 1pdr b.36.1.1 24774 1qavA 90 1.01e-15 1qauA b.36.1.1 24777 2fneA 117 1.04e-15 1q3oA 109 3.45e-15 b.36.1.1 95700 1n7fA 97 3.82e-15 b.36.1.1 91692 1n7eA 97 3.84e-15 b.36.1.1 91691 1l6oA 95 6.07e-14 b.36.1.1 84534 2f5yA 91 1.07e-13 1ihjA 98 1.11e-13 1pdr b.36.1.1 62382 2f0aA 98 1.28e-13 1wf7A 103 2.17e-13 1kwaA 88 4.16e-13 1kwaA b.36.1.1 24772 1nf3C 128 4.45e-13 b.36.1.1 85596 1qauA 112 7.04e-13 1qauA b.36.1.1 24779 1mfgA 95 1.47e-12 b.36.1.1 79043 1v5lA 103 1.55e-12 b.36.1.1 108378 1nteA 82 4.75e-12 b.36.1.1 86163 1r6jA 82 4.75e-12 b.36.1.1 97151 1fc6A 388 1.59e-07 1fc6A b.36.1.3,c.14.1.2 64738,64739 1lcyA 325 7.99e-06 b.36.1.4,b.47.1.1 73834,73835 1te0A 318 1.39e-05 1y8tA 324 1.37e-04 1sotA 320 1.59e-03 b.36.1.4,b.47.1.1 105852,105853 1zn8A 180 4.93e-02 1fxlA 167 6.94e-02 1b7fA d.58.7.1,d.58.7.1 39183,39184 1qb7A 236 1.22e+00 1qb7A c.61.1.1 34087 1ad3A 452 1.28e+00 1ad3A c.82.1.1 35335 1rypB 250 1.34e+00 1rypB d.153.1.4 41933 1lnzA 342 1.45e+00 b.117.1.1,c.37.1.8 78112,78113 1xx6A 191 1.53e+00 1vpqA 273 1.68e+00 1bx4A 345 1.69e+00 1bx4A c.72.1.1 34935 1db3A 372 1.78e+00 1db3A c.2.1.2 29813 1x3mA 415 1.80e+00 1xv5A 401 1.97e+00 1fwkA 296 2.04e+00 1fwkA d.14.1.5,d.58.26.1 37576,39398 1fdr 248 2.27e+00 1fdr b.43.4.2,c.25.1.1 25653,31543 1cq3A 233 2.69e+00 1cq3A b.27.1.1 23923 1evfA 264 3.34e+00 1bkpA d.117.1.1 40932 1q52A 314 3.44e+00 c.14.1.3 95846 1qqqA 264 3.56e+00 1bkpA d.117.1.1 40931 1cliA 345 3.58e+00 1cliA d.79.4.1,d.139.1.1 39816,41459 2g8oA 264 3.65e+00 2g8mA 264 3.68e+00 1h72C 296 5.00e+00 d.14.1.5,d.58.26.1 60712,60713 1g6sA 427 5.99e+00 1eps d.68.2.2 39584 1hvyA 288 6.16e+00 1bkpA d.117.1.1 41049 1rpxA 230 6.31e+00 1rpxA c.1.2.2 28536 1o63A 219 6.36e+00 c.94.1.1 92540 1a4yA 460 6.62e+00 1a4yA c.10.1.1 30852 1opr 213 6.82e+00 1opr c.61.1.1 34091 1uc2A 481 7.32e+00 d.261.1.1 99161 1wlsA 328 7.70e+00 1lh0A 213 7.94e+00 c.61.1.1 73896 1zm8A 259 8.08e+00 1wnfA 328 8.11e+00 1uh5A 329 8.85e+00 c.2.1.2 107840 1mo1A 87 9.16e+00 d.94.1.1 91363 1a8y 367 9.51e+00 1a8y c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 1zxxA 319 9.57e+00 1p35A 299 9.87e+00 1p35A b.28.1.1 23925 1bu6O 501 1.01e+01 1glcG c.55.1.4,c.55.1.4 33499,33500 1rxxA 421 1.02e+01 d.126.1.4 98061 1g2qA 187 1.08e+01 c.61.1.1 65117 1yloA 348 1.09e+01 1vdmA 153 1.16e+01 1vchA 175 1.28e+01 2bw3A 534 1.30e+01 1cjbA 231 1.31e+01 1qk3A c.61.1.1 34079 2d4pA 141 1.37e+01 1fjrA 195 1.42e+01 1fjrA b.102.1.1 59855 1xwsA 313 1.46e+01 1fsgA 233 1.49e+01 1qk3A c.61.1.1 34029 1o6dA 163 1.65e+01 c.116.1.3 92567 1y96A 86 1.68e+01 1yjmA 110 1.69e+01 1g57A 217 1.84e+01 1g57A d.115.1.2 60253 1r13A 148 1.85e+01 d.169.1.1,h.1.1.1 96782,96783 2az4A 429 1.88e+01 1xmrA 243 1.93e+01 1w78A 422 1.95e+01 1fr3A 67 2.00e+01 1fr3A b.40.6.1 25436 1ti6A 875 2.01e+01 b.52.2.2,c.81.1.1 106974,106975 1ypvA 313 2.08e+01 1w30A 201 2.19e+01 1t6t1 118 2.20e+01 2cw8A 537 2.23e+01 1l1qA 186 2.46e+01 c.61.1.1 77653 1l1dA 152 2.47e+01 b.88.1.3 73452 1f28A 297 2.49e+01 1bkpA d.117.1.1 59608 1se8A 301 2.49e+01 b.40.4.3 105448 2bh8A 101 2.49e+01 1efvA 315 2.53e+01 1efvA c.26.2.3,c.31.1.2 31633,31728 2bnjA 303 2.57e+01 1ugmA 125 2.63e+01 d.15.1.3 107827 1u9yA 284 2.63e+01 1r31A 428 2.64e+01 d.58.20.1,d.179.1.1 96897,96898 1q1rA 431 2.66e+01 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 1ecfA 504 2.67e+01 1ecfB c.61.1.1,d.153.1.1 34053,41820 2bsyA 278 2.70e+01 1zq9A 285 2.70e+01 1v61A 132 2.78e+01 b.55.1.1 108389 2b8tA 223 2.90e+01 1dmgA 225 2.90e+01 1dmgA c.22.1.1 31036 1rypL 212 2.95e+01 d.153.1.4 41880 1h3gA 601 2.99e+01 b.1.18.2,b.71.1.1,c.1.8.1 90594,90595,90596 1mkmA 249 3.04e+01 a.4.5.33,d.110.2.2 79242,79243 1eu1A 780 3.05e+01 1dmr b.52.2.2,c.81.1.1 26903,35311 1zsyA 357 3.09e+01 1b25A 619 3.14e+01 1b25A a.110.1.1,d.152.1.1 19044,41796 1w77A 228 3.15e+01 1qgdA 662 3.32e+01 c.36.1.6,c.36.1.10,c.48.1.1 88367,88368,88369 1zq1C 633 3.33e+01 1jalA 363 3.49e+01 c.37.1.8,d.15.10.2 84138,84139 4pfk 319 3.51e+01 3pfk c.89.1.1 35582 1oroA 213 3.52e+01 1opr c.61.1.1 34093 1b63A 333 3.55e+01 1b63A d.14.1.3,d.122.1.2 37566,41107 1zwxA 301 3.65e+01 1csh 435 3.66e+01 1csh a.103.1.1 18880 1a44 185 3.69e+01 1a44 b.17.1.1 23704 2bikB 313 3.71e+01 1gpjA 404 3.85e+01 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1i1wA 303 3.98e+01 c.1.8.3 76732 1wl4A 397 4.02e+01 1vraB 215 4.09e+01 2aamA 309 4.30e+01 1i52A 236 4.34e+01 1i52A c.68.1.13 61767 1t0hB 224 4.34e+01 c.37.1.1 106208 1rwzA 245 4.37e+01 d.131.1.2,d.131.1.2 98005,98006 2bryA 497 4.41e+01 1euwA 152 4.43e+01 1dupA b.85.4.1 28349 1gvhA 396 4.51e+01 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 1d7oA 297 4.59e+01 1enp c.2.1.2 29907 2brfA 110 4.61e+01 1un8A 552 4.71e+01 c.119.1.2,a.208.1.1 103806,99661 2fvgA 340 4.74e+01 2adcA 229 4.80e+01 1vheA 373 4.87e+01 b.49.3.1,c.56.5.4 100669,100670 1ha1 184 4.87e+01 1ha1 d.58.7.1,d.58.7.1 39147,39148 1h65A 270 4.89e+01 c.37.1.8 65640 2fa1A 160 4.95e+01 1enp 312 5.00e+01 1enp c.2.1.2 29906 1vcaA 202 5.19e+01 1vcaA b.1.1.3,b.1.1.4 21649,21685 2ckiA 262 5.20e+01 1vybA 238 5.22e+01 d.151.1.1 108897 2bb3A 221 5.27e+01 1jmuB 666 5.46e+01 1s1iG 119 5.50e+01 i.1.1.1 105181 1w94A 156 5.55e+01 2aynA 404 5.58e+01 1y791 680 5.74e+01 1vkmA 297 5.76e+01 c.138.1.1 108670 2axcA 264 5.77e+01 1xebA 150 5.81e+01 1g5bA 221 5.86e+01 1g5bA d.159.1.3 60261 2furA 209 5.90e+01 1c9oA 66 5.95e+01 1mjc b.40.4.5 25325 1uthA 315 5.96e+01 c.94.1.1 108032 1o7fA 469 6.04e+01 a.4.5.31,b.82.3.2,b.82.3.2 81131,81132,81133 2cwaA 263 6.14e+01 1sw5A 275 6.30e+01 c.94.1.1 106069 2f6rA 281 6.31e+01 1viuA 203 6.31e+01 d.113.1.1 100771 1rf6A 427 6.32e+01 d.68.2.2 97366 1nepA 130 6.34e+01 b.1.18.7 80440 1y0bA 197 6.34e+01 1vj0A 380 6.45e+01 b.35.1.2,c.2.1.1 100786,100787 1obfO 335 6.52e+01 c.2.1.3,d.81.1.1 86768,86769 1qkkA 155 6.53e+01 1dbwA c.23.1.1 31104 1l0bA 229 6.56e+01 c.15.1.3,c.15.1.3 73391,73392 2ffmA 91 6.62e+01 1yqfA 203 6.80e+01 2f9dA 125 6.91e+01 1amm 174 7.05e+01 1amm b.11.1.1,b.11.1.1 23587,23588 4gcr 174 7.05e+01 1amm b.11.1.1,b.11.1.1 23589,23590 2a9gA 418 7.08e+01 1t3qB 788 7.23e+01 d.41.1.1,d.133.1.1 106369,106370 2cq2A 114 7.37e+01 1o12A 376 7.41e+01 b.92.1.5,c.1.9.10 80758,80759 1ojhA 65 7.42e+01 a.214.1.1 103976 1lw6I 64 7.43e+01 d.40.1.1 74294 1llnA 262 7.49e+01 d.165.1.1 84625 1zhvA 134 7.49e+01 2bgiA 272 7.75e+01 1zpwX 90 7.83e+01 2rslA 140 7.87e+01 2rslA c.53.1.1 33345 1r4aA 165 7.95e+01 c.37.1.8 96986 1i9zA 347 7.97e+01 1i9yA d.151.1.2 62102 1yg9A 330 8.02e+01 1yqgA 263 8.12e+01 1to2I 64 8.16e+01 1wrvA 308 8.18e+01 1b0uA 262 8.24e+01 1b0uA c.37.1.12 32370 1xdnA 277 8.41e+01 2faoA 309 8.41e+01 2covD 104 8.43e+01 2ghpA 292 8.45e+01 1ueoA 63 8.46e+01 j.107.1.1 99269 1idk 359 8.53e+01 1qcxA b.80.1.2 28025 1egaA 301 8.54e+01 1egaA c.37.1.8,d.52.3.1 32150,38836 1zhhB 242 8.54e+01 1gky 187 8.57e+01 1gky c.37.1.1 31839 1xhfA 123 8.61e+01 1xodA 118 8.82e+01 1v93A 296 8.87e+01 c.1.23.1 100532 2cyjA 118 8.89e+01 2bs3A 656 8.99e+01