# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1g9oA 91 4.34e-17 1pdr b.36.1.1 60400 2fneA 117 8.11e-17 2fe5A 94 3.04e-16 1tp5A 119 6.28e-16 1be9A 119 9.77e-16 1pdr b.36.1.1 24774 2fcfA 103 1.68e-15 1qavA 90 9.53e-15 1qauA b.36.1.1 24777 1n7eA 97 2.04e-14 b.36.1.1 91691 1n7fA 97 1.07e-13 b.36.1.1 91692 1ihjA 98 1.08e-13 1pdr b.36.1.1 62382 1v5lA 103 1.09e-13 b.36.1.1 108378 1q3oA 109 1.28e-13 b.36.1.1 95700 1l6oA 95 3.03e-13 b.36.1.1 84534 1wf7A 103 3.16e-13 1qauA 112 5.66e-13 1qauA b.36.1.1 24779 2f0aA 98 7.47e-13 2f5yA 91 9.65e-13 1nf3C 128 2.91e-12 b.36.1.1 85596 1mfgA 95 3.11e-12 b.36.1.1 79043 1kwaA 88 9.70e-12 1kwaA b.36.1.1 24772 1r6jA 82 5.31e-10 b.36.1.1 97151 1nteA 82 6.89e-10 b.36.1.1 86163 1te0A 318 1.11e-05 1fc6A 388 1.20e-05 1fc6A b.36.1.3,c.14.1.2 64738,64739 1lcyA 325 1.55e-05 b.36.1.4,b.47.1.1 73834,73835 1sotA 320 2.63e-04 b.36.1.4,b.47.1.1 105852,105853 1y8tA 324 4.65e-03 2bh4X 134 3.92e-01 1db3A 372 9.43e-01 1db3A c.2.1.2 29813 1xe0A 114 9.83e-01 1fxlA 167 1.32e+00 1b7fA d.58.7.1,d.58.7.1 39183,39184 2b4aA 138 1.47e+00 1rm6A 769 1.48e+00 1cot 129 1.56e+00 1ycc a.3.1.1 15899 1xwsA 313 2.43e+00 2bikB 313 2.49e+00 1jhfA 202 2.73e+00 a.4.5.2,b.87.1.1 63057,63058 2a6tA 271 2.84e+00 1bx4A 345 3.79e+00 1bx4A c.72.1.1 34935 2covD 104 4.28e+00 1t3qB 788 4.52e+00 d.41.1.1,d.133.1.1 106369,106370 1r13A 148 4.65e+00 d.169.1.1,h.1.1.1 96782,96783 1x6vA 630 5.78e+00 1koe 172 6.20e+00 1koe d.169.1.5 42448 1ql3A 99 6.21e+00 1ycc a.3.1.1 15822 1euwA 152 6.76e+00 1dupA b.85.4.1 28349 1a6f 119 6.85e+00 1a6f d.14.1.2 37564 1ihgA 370 6.87e+00 2cpl a.118.8.1,b.62.1.1 62380,62381 1vpqA 273 6.92e+00 1sw5A 275 8.56e+00 c.94.1.1 106069 1lnzA 342 8.68e+00 b.117.1.1,c.37.1.8 78112,78113 1p35A 299 8.71e+00 1p35A b.28.1.1 23925 1pueE 89 9.15e+00 1awcA a.4.5.21 16165 2b3oA 532 9.25e+00 1y7rA 133 9.30e+00 1p99A 295 1.03e+01 c.94.1.1 94384 1dxrH 258 1.05e+01 6prcH b.41.1.1,f.23.10.1 25456,43433 1sw5B 275 1.08e+01 c.94.1.1 106070 1wveC 80 1.10e+01 2axcA 264 1.40e+01 1ze3H 122 1.42e+01 1y96A 86 1.65e+01 1diiC 80 1.67e+01 1diiC a.3.1.1 15925 1r61A 207 1.74e+01 c.8.8.1 97138 2fwkA 121 1.74e+01 1dpuA 99 1.93e+01 1dpuA a.4.5.16 16150 1i8lC 126 1.95e+01 1ah1 b.1.1.1 61974 1cruA 454 1.97e+01 1c9uA b.68.2.1 27617 1o63A 219 2.04e+01 c.94.1.1 92540 1viuA 203 2.08e+01 d.113.1.1 100771 1dg6A 191 2.08e+01 1d4vB b.22.1.1 23883 1l1dA 152 2.17e+01 b.88.1.3 73452 1zj6A 187 2.35e+01 2aqwA 332 2.43e+01 2a19B 284 2.44e+01 1z1dA 103 2.48e+01 1mq7A 154 2.50e+01 b.85.4.1 79404 1j24A 143 2.59e+01 c.52.1.20 84008 1y7xA 113 2.62e+01 2b3yA 888 2.65e+01 1xebA 150 2.68e+01 1qo0D 196 2.73e+01 1qo0D c.23.1.3 31125 1z5lA 285 2.79e+01 2adoA 196 2.79e+01 1nwaA 203 2.89e+01 d.58.28.1 86295 1jjtA 228 2.91e+01 1a7tA d.157.1.1 63139 1klfB 279 2.95e+01 b.2.3.2,b.2.3.2 72684,72685 1qunB 279 2.97e+01 b.2.3.2,b.2.3.2 22411,22412 1rm6B 324 3.18e+01 1iakA 199 3.20e+01 1iakA b.1.1.2,d.19.1.1 21625,38199 1sixA 174 3.25e+01 b.85.4.1 98892 1r6xA 395 3.42e+01 b.122.1.3,c.26.1.5 97167,97168 2etxA 209 3.48e+01 1kqqA 139 3.57e+01 a.4.3.1 72885 1nvmA 345 3.62e+01 a.5.7.1,c.1.10.5 86249,86250 1rwzA 245 3.67e+01 d.131.1.2,d.131.1.2 98005,98006 3c2c 112 3.68e+01 1ycc a.3.1.1 15885 1ti6A 875 3.94e+01 b.52.2.2,c.81.1.1 106974,106975 1yrlA 491 4.04e+01 1wvqA 167 4.12e+01 1xdyA 298 4.13e+01 1vdmA 153 4.22e+01 1t9iA 163 4.28e+01 1ztxE 108 4.36e+01 1qf8A 182 4.45e+01 1qf8A g.41.4.1 45212 1jj2F 119 4.52e+01 1ffkE d.79.3.1 63091 1th7A 81 4.58e+01 2bbvA 363 4.64e+01 2bbvA b.121.4.4 23323 2c2xA 281 4.71e+01 2brfA 110 4.75e+01 1h9oA 112 4.79e+01 1qadA d.93.1.1 60837 1a8y 367 4.89e+01 1a8y c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 2cc0A 195 4.89e+01 1ww7A 160 4.94e+01 1oiaA 95 4.95e+01 d.58.7.1 87051 2aa4A 289 5.07e+01 1wolA 122 5.22e+01 1tz9A 367 5.25e+01 c.1.15.6 107466 1yjmA 110 5.26e+01 2bwfA 77 5.29e+01 1h3qA 140 5.32e+01 d.110.4.3 76652 1lw6I 64 5.43e+01 d.40.1.1 74294 1rz2A 254 5.49e+01 b.100.1.1 105130 1bxeA 113 5.49e+01 1bxeA d.55.1.1 38898 1rxwA 336 5.51e+01 a.60.7.1,c.120.1.2 98059,98060 1i50C 318 5.52e+01 d.74.3.1,d.181.1.1 61756,61757 1x1zA 252 5.57e+01 1yloA 348 5.70e+01 1b43A 340 5.74e+01 1a76 a.60.7.1,c.120.1.2 18092,33362 1z6nA 167 5.91e+01 1vj0A 380 5.92e+01 b.35.1.2,c.2.1.1 100786,100787 1em2A 229 5.96e+01 1em2A d.129.3.2 41321 2cw8A 537 6.06e+01 1to2I 64 6.10e+01 1ee8A 266 6.20e+01 1ee8A a.156.1.2,b.113.1.1,g.39.1.8 75823,75824,75825 1irsA 112 6.23e+01 1qqgA b.55.1.2 26991 1twfC 318 6.42e+01 1qynA 153 6.45e+01 d.33.1.1 96597 1zkkA 167 6.52e+01 1mjhA 162 6.53e+01 1mjhA c.26.2.4 31639 2fdsA 352 6.58e+01 1obfO 335 6.60e+01 c.2.1.3,d.81.1.1 86768,86769 1quqA 129 6.63e+01 1quqA b.40.4.3 25303 1pk1B 89 6.65e+01 1mo1A 87 6.70e+01 d.94.1.1 91363 1vs0A 310 6.73e+01 1m4zA 238 6.76e+01 b.34.12.1 78630 1p5vB 147 6.79e+01 b.2.3.2 87814 1qw2A 102 6.83e+01 d.249.1.1 96456 1xbbA 291 6.98e+01 1rpyA 114 7.03e+01 d.93.1.1 97718 1dpe 507 7.12e+01 1dpe c.94.1.1 35799 1se8A 301 7.14e+01 b.40.4.3 105448 1kw4A 89 7.21e+01 a.60.1.2 73077 1nu4A 97 7.26e+01 d.58.7.1 80731 1wdiA 345 7.36e+01 1np6A 174 7.36e+01 c.37.1.10 85954 1a79A 171 7.38e+01 1a79A c.52.2.1,d.75.1.1 33340,39739 2fikA 287 7.38e+01 2byjA 439 7.40e+01 1wcuA 153 7.44e+01 1gky 187 7.57e+01 1gky c.37.1.1 31839 1xrsA 516 7.60e+01 1f9aA 168 7.63e+01 1f9aA c.26.1.3 31602 2rslA 140 7.79e+01 2rslA c.53.1.1 33345 1p2zA 968 7.86e+01 b.121.2.2,b.121.2.2 93962,93963 1ug1A 92 7.98e+01 b.34.2.1 99360 1ctqA 166 8.01e+01 1ctqA c.37.1.8 31965 1qqgA 264 8.01e+01 1qqgA b.55.1.2,b.55.1.2 26987,26988 1p32A 209 8.03e+01 1p32A d.25.1.1 38379 1ksiA 642 8.05e+01 1ksiB b.30.2.1,d.17.2.1,d.17.2.1 24408,38043,38044 1reqB 637 8.13e+01 1reqB c.1.19.1,c.23.6.1 29621,31248 2cwaA 263 8.17e+01 2bkfA 87 8.19e+01 1rss 151 8.50e+01 1rss a.75.1.1 18392 1sdwA 314 8.54e+01 b.121.1.2,b.121.1.2 98810,98811 1ex7A 186 8.70e+01 1gky c.37.1.1 59537 2ccmA 191 8.71e+01 1eo6A 117 8.76e+01 1eo6A d.15.1.3 37609 1qyaA 307 8.78e+01 d.21.1.2,d.21.1.2 104653,104654 1c9oA 66 8.80e+01 1mjc b.40.4.5 25325 1wi6A 88 8.82e+01 1a6cA 513 8.93e+01 1a6cA b.121.4.2,b.121.4.2,b.121.4.2 23296,23297,23298