Best Alignments for T0339

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1jf9A/T0339-1jf9A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1jf9A/T0339-1jf9A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.4489e-409.25e-234 1c0nA c.67.1.3
1v2dA/T0339-1v2dA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1v2dA/T0339-1v2dA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.6866e-233.45e-149 c.67.1.1
1kl1A/T0339-1kl1A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1kl1A/T0339-1kl1A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.1502e-211.09e-117 c.67.1.4
1yjsA/T0339-1yjsA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1yjsA/T0339-1yjsA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.8832e-202.81e-116
1wyuB/T0339-1wyuB-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1wyuB/T0339-1wyuB-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.6172e-192.88e-120
1wyuA/T0339-1wyuA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1wyuA/T0339-1wyuA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.5785e-172.87e-114
1pmmA/T0339-1pmmA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1pmmA/T0339-1pmmA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.8965e-167.93e-113 c.67.1.6
1yizA/T0339-1yizA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1yizA/T0339-1yizA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.9870e-161.16e-115
1yiyA/T0339-1yiyA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1yiyA/T0339-1yiyA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 9.1277e-166.25e-115
2bwnA/T0339-2bwnA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2bwnA/T0339-2bwnA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.5349e-152.90e-107

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001