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Sequence Alignment and Modeling Software System
http://www.soe.ucsc.edu/research/compbio/sam.html

Citations (SAM, SAM-T99, HMMs)

Sequence numbers correspond to the following labels:

    • T0339 SCLY, Homo sapiens, 416 res
    • gi|75857376|ref|ZP_00764992.1|_4:382 COG1104: Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Vibrio sp. Ex25]
    • gi|10383773|ref|NP_009912.2|_98:474 Cysteine desulfurase involved in iron-sulfur cluster (Fe/S) biogenesis; required for the post-transcriptional thio-modification of mitochondrial and cytoplasmic tRNAs; essential protein located predominantly in mitochondria; Nfs1p [Saccharomyces cerevisiae]
    • gi|14588918|emb|CAA42344.2| hypothetical protein [Saccharomyces cerevisiae]
    • gi|45644965|sp|P25374|NFS1_YEAST Cysteine desulfurase, mitochondrial precursor (tRNA-splicing protein SPL1) [Taxonomy]
    • gi|68369130|ref|XP_691182.1|_52:428 PREDICTED: similar to Nitrogen fixation gene, yeast homolog 1 [Danio rerio]
    • gi|94732308|emb|CAK04198.1| novel protein similar to vertebrate NFS1 nitrogen fixation 1 (S. cerevisiae) (NFS1) [Danio rerio]
    • gi|21492741|ref|NP_659816.1|_2:380 pyridoxal-phosphate-dependent aminotransferase protein (nitrogenase cofactor synthesis protein) [Rhizobium etli]
    • gi|15027101|emb|CAC44787.1| pyridoxal phosphate-dependent L-cysteine desulfurase, NifS [Rhizobium etli]
    • gi|21467166|gb|AAM54829.1| pyridoxal-phosphate-dependent aminotransferase protein (nitrogenase cofactor synthesis protein) [Rhizobium etli]
    • gi|68560800|ref|ZP_00600109.1|_116:497 Cysteine desulphurases, SufS [Rubrobacter xylanophilus DSM 9941]
    • gi|68513007|gb|EAN36805.1| Cysteine desulphurases, SufS [Rubrobacter xylanophilus DSM 9941]
    • gi|68245123|gb|EAN27258.1|_750:1121 Aminotransferase, class V:Molybdopterin oxidoreductase:Molydopterin dinucleotide-binding region:Molybdopterin oxidoreductase Fe4S4 region [Magnetococcus sp. MC-1]
    • gi|69261054|ref|ZP_00608314.1| Aminotransferase, class V:Molybdopterin oxidoreductase:Molydopterin dinucleotide-binding region:Molybdopterin oxidoreductase Fe4S4 region [Magnetococcus sp. MC-1]
    • gi|68560850|ref|ZP_00600159.1|_3:371 Aminotransferase, class V [Rubrobacter xylanophilus DSM 9941]
    • gi|68513057|gb|EAN36855.1| Aminotransferase, class V [Rubrobacter xylanophilus DSM 9941]
    • gi|92912344|ref|ZP_01280974.1|_127:505 Aminotransferase, class V:Aromatic amino acid beta-eliminating lyase/threonine aldolase [Mycobacterium sp. KMS]
    • gi|92442890|gb|EAT00727.1| Aminotransferase, class V:Aromatic amino acid beta-eliminating lyase/threonine aldolase [Mycobacterium sp. KMS]
    • gi|91767904|ref|ZP_01269756.1| Aminotransferase, class V:Aromatic amino acid beta-eliminating lyase/threonine aldolase [Mycobacterium sp. MCS]
    • gi|91703842|gb|EAS79559.1| Aminotransferase, class V:Aromatic amino acid beta-eliminating lyase/threonine aldolase [Mycobacterium sp. MCS]
    • gi|18158927|pdb|1KMK|A_24:402 Chain A, E. Coli NifsCSDB PROTEIN AT 2.20A WITH THE CYSTEINE Perselenide Intermediate (Residue Csz). [Taxonomy]
    • gi|18158926|pdb|1KMJ|A Chain A, E. Coli NifsCSDB PROTEIN AT 2.0A WITH THE CYSTEINE Persulfide Intermediate (Residue Css) [Taxonomy]
    • gi|50363620|gb|AAT75605.1|_16:400 similar to selenocysteine lyase, class V pyridoxal phosphate aminotransferase, cysteine desulfurase [Mesoplasma florum L1]
    • gi|50365064|ref|YP_053489.1| similar to selenocysteine lyase, class V pyridoxal phosphate aminotransferase, cysteine desulfurase [Mesoplasma florum L1]
    • gi|77554963|gb|ABA97759.1|_79:491 hypothetical protein LOC_Os12g18900 [Oryza sativa (japonica cultivar-group)]
    • gi|68562471|ref|ZP_00601729.1|_57:436 Cysteine desulphurase related [Rubrobacter xylanophilus DSM 9941]
    • gi|68511356|gb|EAN35205.1| Cysteine desulphurase related [Rubrobacter xylanophilus DSM 9941]
    • gi|7767012|pdb|1ELU|B_17:385 Chain B, Complex Between The Cystine C-S Lyase C-Des And Its Reaction Product Cysteine Persulfide. [Taxonomy]
    • gi|7767011|pdb|1ELU|A Chain A, Complex Between The Cystine C-S Lyase C-Des And Its Reaction Product Cysteine Persulfide. [Taxonomy]
    • gi|7767010|pdb|1ELQ|B Chain B, Crystal Structure Of The Cystine C-S Lyase C-Des [Taxonomy]
    • gi|7767009|pdb|1ELQ|A Chain A, Crystal Structure Of The Cystine C-S Lyase C-Des [Taxonomy]
    • gi|28373850|pdb|1N31|B_13:381 Chain B, Structure Of A Catalytically Inactive Mutant (K223a) Of C- Des With A Substrate (Cystine) Linked To The Co-Factor [Taxonomy]
    • gi|28373849|pdb|1N31|A Chain A, Structure Of A Catalytically Inactive Mutant (K223a) Of C- Des With A Substrate (Cystine) Linked To The Co-Factor [Taxonomy]
    • gi|28373846|pdb|1N2T|B Chain B, C-Des Mutant K223a With Gly Covalenty Linked To The Plp- Cofactor [Taxonomy]
    • gi|28373845|pdb|1N2T|A Chain A, C-Des Mutant K223a With Gly Covalenty Linked To The Plp- Cofactor [Taxonomy]