Best Alignments for T0339

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1t3iA/T0339-1t3iA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1t3iA/T0339-1t3iA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.0436e-321.61e-195 c.67.1.3
1b5pA/T0339-1b5pA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1b5pA/T0339-1b5pA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.2456e-271.09e-159 c.67.1.1
1vefA/T0339-1vefA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1vefA/T0339-1vefA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.1335e-255.38e-143
1wyuB/T0339-1wyuB-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1wyuB/T0339-1wyuB-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.6861e-251.47e-160
1fc4A/T0339-1fc4A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1fc4A/T0339-1fc4A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.4717e-241.53e-147 1bs0A c.67.1.4
2oatA/T0339-2oatA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2oatA/T0339-2oatA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 9.4076e-247.23e-141 2dkb c.67.1.4
1yjsA/T0339-1yjsA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1yjsA/T0339-1yjsA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.1727e-234.13e-134
2bwnA/T0339-2bwnA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2bwnA/T0339-2bwnA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.0651e-221.32e-140
1yizA/T0339-1yizA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1yizA/T0339-1yizA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.4460e-211.59e-129
1yiyA/T0339-1yiyA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1yiyA/T0339-1yiyA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.2068e-201.09e-132

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001