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Sequence Alignment and Modeling Software System
http://www.soe.ucsc.edu/research/compbio/sam.html

Citations (SAM, SAM-T99, HMMs)

Sequence numbers correspond to the following labels:

    • T0339 SCLY, Homo sapiens, 416 res
    • gi|75857376|ref|ZP_00764992.1|_2:383 COG1104: Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Vibrio sp. Ex25]
    • gi|10383773|ref|NP_009912.2|_97:476 Cysteine desulfurase involved in iron-sulfur cluster (Fe/S) biogenesis; required for the post-transcriptional thio-modification of mitochondrial and cytoplasmic tRNAs; essential protein located predominantly in mitochondria; Nfs1p [Saccharomyces cerevisiae]
    • gi|14588918|emb|CAA42344.2| hypothetical protein [Saccharomyces cerevisiae]
    • gi|45644965|sp|P25374|NFS1_YEAST Cysteine desulfurase, mitochondrial precursor (tRNA-splicing protein SPL1) [Taxonomy]
    • gi|68369130|ref|XP_691182.1|_51:430 PREDICTED: similar to Nitrogen fixation gene, yeast homolog 1 [Danio rerio]
    • gi|94732308|emb|CAK04198.1| novel protein similar to vertebrate NFS1 nitrogen fixation 1 (S. cerevisiae) (NFS1) [Danio rerio]
    • gi|68560800|ref|ZP_00600109.1|_115:501 Cysteine desulphurases, SufS [Rubrobacter xylanophilus DSM 9941]
    • gi|68513007|gb|EAN36805.1| Cysteine desulphurases, SufS [Rubrobacter xylanophilus DSM 9941]
    • gi|68560850|ref|ZP_00600159.1|_3:377 Aminotransferase, class V [Rubrobacter xylanophilus DSM 9941]
    • gi|68513057|gb|EAN36855.1| Aminotransferase, class V [Rubrobacter xylanophilus DSM 9941]
    • gi|18158927|pdb|1KMK|A_23:405 Chain A, E. Coli NifsCSDB PROTEIN AT 2.20A WITH THE CYSTEINE Perselenide Intermediate (Residue Csz). [Taxonomy]
    • gi|18158926|pdb|1KMJ|A Chain A, E. Coli NifsCSDB PROTEIN AT 2.0A WITH THE CYSTEINE Persulfide Intermediate (Residue Css) [Taxonomy]
    • gi|92912344|ref|ZP_01280974.1|_125:509 Aminotransferase, class V:Aromatic amino acid beta-eliminating lyase/threonine aldolase [Mycobacterium sp. KMS]
    • gi|92442890|gb|EAT00727.1| Aminotransferase, class V:Aromatic amino acid beta-eliminating lyase/threonine aldolase [Mycobacterium sp. KMS]
    • gi|91767904|ref|ZP_01269756.1| Aminotransferase, class V:Aromatic amino acid beta-eliminating lyase/threonine aldolase [Mycobacterium sp. MCS]
    • gi|91703842|gb|EAS79559.1| Aminotransferase, class V:Aromatic amino acid beta-eliminating lyase/threonine aldolase [Mycobacterium sp. MCS]
    • gi|7767020|pdb|1EQB|D_27:396 Chain D, X-Ray Crystal Structure At 2.7 Angstroms Resolution Of Ternary Complex Between The Y65f Mutant Of E-Coli Serine Hydroxymethyltransferase, Glycine And 5-Formyl Tetrahydrofolate [Taxonomy]
    • gi|7767019|pdb|1EQB|C Chain C, X-Ray Crystal Structure At 2.7 Angstroms Resolution Of Ternary Complex Between The Y65f Mutant Of E-Coli Serine Hydroxymethyltransferase, Glycine And 5-Formyl Tetrahydrofolate [Taxonomy]
    • gi|7767018|pdb|1EQB|B Chain B, X-Ray Crystal Structure At 2.7 Angstroms Resolution Of Ternary Complex Between The Y65f Mutant Of E-Coli Serine Hydroxymethyltransferase, Glycine And 5-Formyl Tetrahydrofolate [Taxonomy]
    • gi|7767017|pdb|1EQB|A Chain A, X-Ray Crystal Structure At 2.7 Angstroms Resolution Of Ternary Complex Between The Y65f Mutant Of E-Coli Serine Hydroxymethyltransferase, Glycine And 5-Formyl Tetrahydrofolate [Taxonomy]
    • gi|21492741|ref|NP_659816.1|_2:381 pyridoxal-phosphate-dependent aminotransferase protein (nitrogenase cofactor synthesis protein) [Rhizobium etli]
    • gi|15027101|emb|CAC44787.1| pyridoxal phosphate-dependent L-cysteine desulfurase, NifS [Rhizobium etli]
    • gi|21467166|gb|AAM54829.1| pyridoxal-phosphate-dependent aminotransferase protein (nitrogenase cofactor synthesis protein) [Rhizobium etli]
    • gi|46109070|ref|XP_381593.1|_52:432 CYSD_EMENI O-ACETYLHOMOSERINE (THIOL)-LYASE (O-ACETYLHOMOSERINE SULFHYDRYLASE) (OAH SULFHYDRYLASE) (HOMOCYSTEINE SYNTHASE) [Gibberella zeae PH-1]
    • gi|42544549|gb|EAA67392.1| CYSD_EMENI O-ACETYLHOMOSERINE (THIOL)-LYASE (O-ACETYLHOMOSERINE SULFHYDRYLASE) (OAH SULFHYDRYLASE) (HOMOCYSTEINE SYNTHASE) [Gibberella zeae PH-1]
    • gi|33357644|pdb|1O4S|B_41:389 Chain B, Crystal Structure Of Aspartate Aminotransferase (Tm1255) From Thermotoga Maritima At 1.90 A Resolution [Taxonomy]
    • gi|33357643|pdb|1O4S|A Chain A, Crystal Structure Of Aspartate Aminotransferase (Tm1255) From Thermotoga Maritima At 1.90 A Resolution [Taxonomy]
    • gi|68562602|ref|ZP_00601853.1|_26:392 Glycine hydroxymethyltransferase [Rubrobacter xylanophilus DSM 9941]
    • gi|68511233|gb|EAN35089.1| Glycine hydroxymethyltransferase [Rubrobacter xylanophilus DSM 9941]
    • gi|50732353|ref|XP_418596.1|_293:704 PREDICTED: similar to Glutamate decarboxylase, 65 kDa isoform (GAD-65) (65 kDa glutamic acid decarboxylase) [Gallus gallus]
    • gi|85567346|gb|AAI11996.1|_550:933 Glycine dehydrogenase (decarboxylating; glycine decarboxylase, glycine cleavage system protein P) [Homo sapiens]
    • gi|85566653|gb|AAI11994.1| Glycine dehydrogenase (decarboxylating; glycine decarboxylase, glycine cleavage system protein P) [Homo sapiens]
    • gi|71041978|pdb|1Y4I|A_54:395 Chain A, Crystal Structure Of Citrobacter Freundii L-Methionine-Lyase [Taxonomy]
    • gi|68245123|gb|EAN27258.1|_748:1128 Aminotransferase, class V:Molybdopterin oxidoreductase:Molydopterin dinucleotide-binding region:Molybdopterin oxidoreductase Fe4S4 region [Magnetococcus sp. MC-1]
    • gi|69261054|ref|ZP_00608314.1| Aminotransferase, class V:Molybdopterin oxidoreductase:Molydopterin dinucleotide-binding region:Molybdopterin oxidoreductase Fe4S4 region [Magnetococcus sp. MC-1]
    • gi|55632977|ref|XP_520482.1|_460:848 PREDICTED: glycine dehydrogenase (decarboxylating; glycine decarboxylase, glycine cleavage system protein P) [Pan troglodytes]
    • gi|76624307|ref|XP_877913.1|_548:932 PREDICTED: similar to Glycine dehydrogenase [decarboxylating], mitochondrial precursor (Glycine decarboxylase) (Glycine cleavage system P-protein) isoform 6 [Bos taurus]
    • gi|121082|sp|P23378|GCSP_HUMAN_550:933 Glycine dehydrogenase [decarboxylating], mitochondrial precursor (Glycine decarboxylase) (Glycine cleavage system P-protein) [Taxonomy]
    • gi|190287|gb|AAA36478.1| glycine decarboxylase [Taxonomy]