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Sequence Alignment and Modeling Software System
http://www.soe.ucsc.edu/research/compbio/sam.html

Citations (SAM, SAM-T99, HMMs)

Sequence numbers correspond to the following labels:

    • T0339 SCLY, Homo sapiens, 416 res
    • gi|75857376|ref|ZP_00764992.1|_2:384 COG1104: Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Vibrio sp. Ex25]
    • gi|10383773|ref|NP_009912.2|_97:475 Cysteine desulfurase involved in iron-sulfur cluster (Fe/S) biogenesis; required for the post-transcriptional thio-modification of mitochondrial and cytoplasmic tRNAs; essential protein located predominantly in mitochondria; Nfs1p [Saccharomyces cerevisiae]
    • gi|14588918|emb|CAA42344.2| hypothetical protein [Saccharomyces cerevisiae]
    • gi|45644965|sp|P25374|NFS1_YEAST Cysteine desulfurase, mitochondrial precursor (tRNA-splicing protein SPL1) [Taxonomy]
    • gi|68369130|ref|XP_691182.1|_51:431 PREDICTED: similar to Nitrogen fixation gene, yeast homolog 1 [Danio rerio]
    • gi|94732308|emb|CAK04198.1| novel protein similar to vertebrate NFS1 nitrogen fixation 1 (S. cerevisiae) (NFS1) [Danio rerio]
    • gi|68560800|ref|ZP_00600109.1|_115:501 Cysteine desulphurases, SufS [Rubrobacter xylanophilus DSM 9941]
    • gi|68513007|gb|EAN36805.1| Cysteine desulphurases, SufS [Rubrobacter xylanophilus DSM 9941]
    • gi|68560850|ref|ZP_00600159.1|_2:380 Aminotransferase, class V [Rubrobacter xylanophilus DSM 9941]
    • gi|68513057|gb|EAN36855.1| Aminotransferase, class V [Rubrobacter xylanophilus DSM 9941]
    • gi|18158927|pdb|1KMK|A_23:406 Chain A, E. Coli NifsCSDB PROTEIN AT 2.20A WITH THE CYSTEINE Perselenide Intermediate (Residue Csz). [Taxonomy]
    • gi|18158926|pdb|1KMJ|A Chain A, E. Coli NifsCSDB PROTEIN AT 2.0A WITH THE CYSTEINE Persulfide Intermediate (Residue Css) [Taxonomy]
    • gi|68245123|gb|EAN27258.1|_748:1128 Aminotransferase, class V:Molybdopterin oxidoreductase:Molydopterin dinucleotide-binding region:Molybdopterin oxidoreductase Fe4S4 region [Magnetococcus sp. MC-1]
    • gi|69261054|ref|ZP_00608314.1| Aminotransferase, class V:Molybdopterin oxidoreductase:Molydopterin dinucleotide-binding region:Molybdopterin oxidoreductase Fe4S4 region [Magnetococcus sp. MC-1]
    • gi|21492741|ref|NP_659816.1|_2:381 pyridoxal-phosphate-dependent aminotransferase protein (nitrogenase cofactor synthesis protein) [Rhizobium etli]
    • gi|15027101|emb|CAC44787.1| pyridoxal phosphate-dependent L-cysteine desulfurase, NifS [Rhizobium etli]
    • gi|21467166|gb|AAM54829.1| pyridoxal-phosphate-dependent aminotransferase protein (nitrogenase cofactor synthesis protein) [Rhizobium etli]
    • gi|92912344|ref|ZP_01280974.1|_125:509 Aminotransferase, class V:Aromatic amino acid beta-eliminating lyase/threonine aldolase [Mycobacterium sp. KMS]
    • gi|92442890|gb|EAT00727.1| Aminotransferase, class V:Aromatic amino acid beta-eliminating lyase/threonine aldolase [Mycobacterium sp. KMS]
    • gi|91767904|ref|ZP_01269756.1| Aminotransferase, class V:Aromatic amino acid beta-eliminating lyase/threonine aldolase [Mycobacterium sp. MCS]
    • gi|91703842|gb|EAS79559.1| Aminotransferase, class V:Aromatic amino acid beta-eliminating lyase/threonine aldolase [Mycobacterium sp. MCS]
    • gi|71041978|pdb|1Y4I|A_28:395 Chain A, Crystal Structure Of Citrobacter Freundii L-Methionine-Lyase [Taxonomy]
    • gi|871827|gb|AAB03240.1|_17:397 L-methionine-alpha-deamino-gamma-mercaptomethane- lyase [Taxonomy]
    • gi|55587242|ref|XP_513486.1|_327:688 PREDICTED: similar to cystathionase isoform 1; homoserine deaminase; homoserine dehydratase; cysteine desulfhydrase; gamma-cystathionase [Pan troglodytes]
    • gi|56554173|pdb|1UKJ|D_30:395 Chain D, Detailed Structure Of L-Methionine-Lyase From Pseudomonas Putida [Taxonomy]
    • gi|56554172|pdb|1UKJ|C Chain C, Detailed Structure Of L-Methionine-Lyase From Pseudomonas Putida [Taxonomy]
    • gi|56554171|pdb|1UKJ|B Chain B, Detailed Structure Of L-Methionine-Lyase From Pseudomonas Putida [Taxonomy]
    • gi|56554170|pdb|1UKJ|A Chain A, Detailed Structure Of L-Methionine-Lyase From Pseudomonas Putida [Taxonomy]
    • gi|21465434|pdb|1GC2|D Chain D, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent L- Methionine Gamma-Lyase From Pseudomonas Putida [Taxonomy]
    • gi|21465433|pdb|1GC2|C Chain C, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent L- Methionine Gamma-Lyase From Pseudomonas Putida [Taxonomy]
    • gi|21465432|pdb|1GC2|B Chain B, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent L- Methionine Gamma-Lyase From Pseudomonas Putida [Taxonomy]
    • gi|21465431|pdb|1GC2|A Chain A, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent L- Methionine Gamma-Lyase From Pseudomonas Putida [Taxonomy]
    • gi|21465430|pdb|1GC0|D Chain D, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent L- Methionine Gamma-Lyase From Pseudomonas Putida [Taxonomy]
    • gi|21465429|pdb|1GC0|C Chain C, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent L- Methionine Gamma-Lyase From Pseudomonas Putida [Taxonomy]
    • gi|21465428|pdb|1GC0|B Chain B, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent L- Methionine Gamma-Lyase From Pseudomonas Putida [Taxonomy]
    • gi|21465427|pdb|1GC0|A Chain A, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent L- Methionine Gamma-Lyase From Pseudomonas Putida [Taxonomy]
    • gi|46109070|ref|XP_381593.1|_55:431 CYSD_EMENI O-ACETYLHOMOSERINE (THIOL)-LYASE (O-ACETYLHOMOSERINE SULFHYDRYLASE) (OAH SULFHYDRYLASE) (HOMOCYSTEINE SYNTHASE) [Gibberella zeae PH-1]
    • gi|42544549|gb|EAA67392.1| CYSD_EMENI O-ACETYLHOMOSERINE (THIOL)-LYASE (O-ACETYLHOMOSERINE SULFHYDRYLASE) (OAH SULFHYDRYLASE) (HOMOCYSTEINE SYNTHASE) [Gibberella zeae PH-1]
    • gi|15826194|pdb|1E5F|B_27:398 Chain B, Methionine Gamma-Lyase (Mgl) From Trichomonas Vaginalis [Taxonomy]
    • gi|15826193|pdb|1E5F|A Chain A, Methionine Gamma-Lyase (Mgl) From Trichomonas Vaginalis [Taxonomy]
    • gi|15826192|pdb|1E5E|B Chain B, Methionine Gamma-Lyase (Mgl) From Trichomonas Vaginalis In Complex With Propargylglycine [Taxonomy]
    • gi|15826191|pdb|1E5E|A Chain A, Methionine Gamma-Lyase (Mgl) From Trichomonas Vaginalis In Complex With Propargylglycine [Taxonomy]