# List of top-scoring protein chains for t04-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1p3wA 404 1.46e-56 c.67.1.3 87752 1t3iA 420 6.70e-52 c.67.1.3 106354 1jf9A 408 2.53e-51 1c0nA c.67.1.3 62931 1eg5A 384 1.47e-50 1ecxA c.67.1.3 34429 1e5eA 404 4.72e-39 1ibjA c.67.1.3 59265 1gc0A 398 1.26e-37 c.67.1.3 70168 1elqA 390 2.81e-37 1elqA c.67.1.3 34436 1eluA 390 2.81e-37 1elqA c.67.1.3 34434 1cs1A 386 1.58e-35 1ibjA c.67.1.3 34399 1qz9A 416 5.69e-33 c.67.1.3 96621 1vjoA 393 1.83e-28 c.67.1.3 100827 1cl1A 395 8.84e-26 1cl2A c.67.1.3 34395 1v2dA 381 6.57e-23 c.67.1.1 108281 1m32A 366 5.69e-21 c.67.1.3 78508 1iugA 352 5.72e-20 c.67.1.3 90699 1o4sA 389 6.72e-19 c.67.1.1 86620 1jg8A 347 2.96e-18 1jg8A c.67.1.1 62946 1m6sA 347 3.16e-18 c.67.1.1 78701 1b5pA 385 8.43e-17 c.67.1.1 90403 1mdoA 393 1.32e-16 c.67.1.4 79013 1gdeA 389 1.36e-16 c.67.1.1 60456 1bjwA 382 1.40e-16 1bjwA c.67.1.1 34349 1kl1A 419 1.90e-16 c.67.1.4 72663 1wyuB 474 2.84e-16 1lc5A 364 3.35e-16 c.67.1.1 73827 1z7dA 433 3.41e-16 1yjsA 419 4.93e-16 1vefA 395 5.34e-16 2bwnA 401 1.10e-15 1fc4A 401 1.88e-15 1bs0A c.67.1.4 59760 1w7lA 422 2.29e-15 c.67.1.1 109226 1pmmA 466 2.49e-15 c.67.1.6 94901 1bw0A 416 2.75e-15 1bw0A c.67.1.1 34385 1bs0A 384 4.23e-15 1bs0A c.67.1.4 34490 1dfoA 417 5.82e-15 1bj4A c.67.1.4 34480 1wyuA 438 8.74e-15 1yizA 429 1.12e-14 1yiyA 429 2.05e-14 1svvA 359 4.92e-14 c.67.1.1 106054 1w23A 360 8.81e-14 1u08A 386 1.17e-13 c.67.1.1 107543 1b9hA 388 1.31e-13 1b9hA c.67.1.4 34488 2aeuA 374 1.69e-13 1m7yA 435 3.07e-13 c.67.1.4 78761 1gewA 356 5.84e-13 1gewA c.67.1.1 60470 1fg7A 356 8.61e-13 1gewA c.67.1.1 59819 1oatA 439 8.91e-13 2dkb c.67.1.4 34461 2oatA 439 8.98e-13 2dkb c.67.1.4 34452 1b8gA 429 9.52e-13 1b8gA c.67.1.4 34499 2byjA 439 1.15e-12 2bylA 439 1.56e-12 1o69A 394 2.86e-12 c.67.1.4 92560 2fnuA 375 2.96e-12 1ynuA 473 3.06e-12 1rv3A 483 3.39e-12 c.67.1.4 105101 2c0rA 362 3.97e-12 1vp4A 425 4.57e-12 1wstA 417 8.10e-12 1w3uA 362 8.23e-12 1bj4A 470 1.10e-11 1bj4A c.67.1.4 34479 1v72A 356 1.56e-11 1sffA 426 2.41e-11 c.67.1.4 105482 1js3A 486 3.60e-11 c.67.1.6 67215 2gsaA 432 5.63e-11 2gsaA c.67.1.4 34446 1bjnA 360 5.65e-11 1bjnA c.67.1.4 34469 1ax4A 467 6.10e-11 1ax4A c.67.1.2 34391 1uu1A 335 1.01e-10 c.67.1.1 99993 1c7gA 456 1.16e-10 c.67.1.2 90415 1c7nA 399 2.02e-10 1d2fA c.67.1.3 34413 1lk9A 448 6.47e-10 c.67.1.1 78057 1d7uA 433 8.06e-10 2dkb c.67.1.4 34439 1ars 396 1.00e-09 1ajsA c.67.1.1 34287 2dkb 433 1.14e-09 2dkb c.67.1.4 34438 1qisA 396 2.08e-09 1ajsA c.67.1.1 34284 1d2fA 390 2.13e-09 1d2fA c.67.1.3 34411 1ahxA 396 9.48e-09 1ajsA c.67.1.1 34293 1ohvA 472 3.55e-08 c.67.1.4 93031 1s0aA 429 6.10e-07 c.67.1.4 98263 1qj5A 429 7.26e-07 1dtyA c.67.1.4 34493 7aatA 401 1.70e-06 1ajsA c.67.1.1 34250 1c4kA 730 5.04e-06 1ordA c.23.1.4,c.67.1.5,d.125.1.1 31273,34502,41123 1ajsA 412 5.72e-06 1ajsA c.67.1.1 34276 1e5dA 402 2.95e-02 1e5dA c.23.5.1,d.157.1.3 31208,42061 1k30A 368 5.59e-02 c.112.1.1 68067 1vljA 407 1.01e-01 e.22.1.2 108832 2d13A 227 1.39e-01 1pamA 686 1.95e-01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21846,22515,27753,28740 2gjlA 328 2.42e-01 1mvoA 136 3.28e-01 c.23.1.1 79513 2ng1 293 3.55e-01 1ng1 a.24.13.1,c.37.1.10 16962,32273 1t7lA 766 3.68e-01 1zj8A 566 3.91e-01 1rd5A 262 3.97e-01 1ls1A 295 4.00e-01 a.24.13.1,c.37.1.10 78170,78171 1nal1 297 4.13e-01 1nal3 1hl2A 297 4.32e-01 c.1.10.1 83581 1uqrA 154 5.61e-01 c.23.13.1 99779 1ut9A 609 6.20e-01 a.102.1.2,b.1.18.2 99912,99913 1a0cA 438 7.11e-01 1a0cA c.1.15.3 29529 2ax3A 502 7.29e-01 1tz9A 367 8.47e-01 c.1.15.6 107466 1g5tA 196 8.48e-01 1g5rA c.37.1.11 32366 1o5kA 306 8.86e-01 c.1.10.1 92504 1d3cA 686 1.08e+00 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21827,22496,27734,28721 1luaA 287 1.13e+00 c.2.1.7,c.58.1.4 78216,78217 1g5aA 628 1.17e+00 b.71.1.1,c.1.8.1 65152,65153 1o7jA 327 1.22e+00 c.88.1.1 81140 1qs0B 338 1.30e+00 1qs0B c.36.1.7,c.48.1.2 31830,33103 1mv8A 436 1.47e+00 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 1oc2A 348 1.52e+00 c.2.1.2 92765 1kepA 348 1.52e+00 c.2.1.2 68536 1vjtA 483 1.64e+00 c.2.1.5,d.162.1.2 100833,100834 1xi3A 215 1.70e+00 c.1.3.1 109601 1zs9A 261 1.71e+00 1hd7A 318 1.75e+00 1bix d.151.1.1 41780 2sas 185 1.93e+00 2sas a.39.1.5 17258 1o5zA 442 1.94e+00 c.59.1.2,c.72.2.2 92530,92531 1qwgA 251 1.96e+00 c.1.27.1 96473 1sc6A 404 2.01e+00 1rpxA 230 2.05e+00 1rpxA c.1.2.2 28536 1hhsA 664 2.11e+00 1hi0P e.8.1.6 61045 7taa 478 2.39e+00 7taa b.71.1.1,c.1.8.1 27778,28765 1f2tB 148 2.47e+00 1f2tB 1ko7A 314 2.50e+00 c.98.2.1,c.91.1.2 72797,72798 1fts 295 2.62e+00 1ng1 a.24.13.1,c.37.1.10 16968,32279 1iuqA 367 2.69e+00 c.112.1.1 90703 1uvjA 664 2.75e+00 e.8.1.6 100045 1t2dA 322 3.06e+00 c.2.1.5,d.162.1.1 99084,99085 1vb5A 276 3.20e+00 2bx2L 517 3.34e+00 1ru8A 232 3.49e+00 c.26.2.1 97849 1yt5A 258 3.55e+00 2fhpA 187 3.56e+00 1pq4A 291 3.63e+00 c.92.2.2 94995 1iq8A 582 3.64e+00 c.1.20.1,b.122.1.1,d.17.6.1 71270,83074,83075 1p1mA 406 3.72e+00 b.92.1.4,c.1.9.9 87696,87697 1ff9A 450 4.08e+00 1ff9A c.2.1.3,d.81.1.2 30039,39954 1jq5A 370 4.08e+00 e.22.1.2 67084 1v8dA 235 4.13e+00 c.140.1.1 108425 1pn0A 665 4.15e+00 c.3.1.2,c.47.1.10,d.16.1.2 94918,94919,94920 1ayx 492 4.15e+00 1ayx a.102.1.1 18825 2basA 431 4.22e+00 1v9nA 360 4.31e+00 1ccwA 137 4.38e+00 1be1 c.23.6.1 31238 1o58A 303 4.53e+00 c.79.1.1 92491 1k2eA 156 4.55e+00 d.113.1.1 72010 1ldg 316 4.55e+00 1ceqA c.2.1.5,d.162.1.1 30165,42132 1rvkA 382 4.67e+00 c.1.11.2,d.54.1.1 97928,97929 1geqA 248 4.69e+00 2tysA c.1.2.4 28589 1tqjA 230 4.71e+00 c.1.2.2 107228 1vm7A 311 4.81e+00 c.72.1.1 108884 1tluA 130 4.82e+00 d.156.1.2 107139 1vmaA 306 4.86e+00 a.24.13.1,c.37.1.10 108887,108888 2g50A 530 4.91e+00 1sc3A 178 4.95e+00 c.17.1.1 105416 2fbaA 492 5.04e+00 1c30B 382 5.14e+00 c.8.3.1,c.23.16.1 30736,31413 1vr7A 142 5.14e+00 1vp8A 201 5.23e+00 2cunA 410 5.31e+00 1frb 315 5.37e+00 1frb c.1.7.1 28665 1n8fA 350 5.55e+00 c.1.10.4 85397 1gpmA 525 5.57e+00 1gpmA c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1vmeA 410 5.88e+00 c.23.5.1,d.157.1.3 108893,108894 1adoA 363 5.96e+00 1fbaA c.1.10.1 29124 1w78A 422 5.96e+00 1zaiA 363 6.01e+00 1gtmA 419 6.26e+00 1hwyA c.2.1.7,c.58.1.1 30223,33871 1ujpA 271 6.28e+00 c.1.2.4 99462 1a9xB 379 6.32e+00 1c3oB c.8.3.1,c.23.16.1 30732,31409 1lf6A 684 6.44e+00 a.102.1.5,b.30.5.5 77918,77919 1psdA 409 6.47e+00 1psdA c.2.1.4,c.23.12.1,d.58.18.1 30097,31357,39354 1fohA 664 6.47e+00 1fohA c.3.1.2,c.47.1.10,d.16.1.2 30381,33078,37900 1u09A 476 6.55e+00 e.8.1.4 107545 1wl8A 189 6.61e+00 2ag5A 246 6.63e+00 1gd1O 334 6.67e+00 1dssG c.2.1.3,d.81.1.1 29962,39877 2axpA 173 6.68e+00 2bznA 351 6.76e+00 2fbmA 291 6.85e+00 1wd7A 261 6.91e+00 1wzuA 300 7.13e+00 1y80A 210 7.21e+00 1rwxA 178 7.32e+00 1vr5A 547 7.42e+00 1fsz 372 7.45e+00 1fsz c.32.1.1,d.79.2.1 31750,39802 1j6pA 418 7.52e+00 b.92.1.4,c.1.9.9 77089,77090 1ecfA 504 7.68e+00 1ecfB c.61.1.1,d.153.1.1 34053,41820 1i1qA 520 7.74e+00 1qdlA d.161.1.1 61543 1wqaA 455 7.89e+00 1wmaA 276 7.89e+00 1m6yA 301 7.92e+00 a.60.13.1,c.66.1.23 78716,78717 2c0cA 362 8.28e+00 1eziA 228 8.56e+00 1eyrA c.68.1.13 34512 1wcwA 261 8.68e+00 2fp3A 316 8.92e+00 1l3iA 192 8.95e+00 c.66.1.22 77676 1zq4A 693 9.01e+00 1jztA 246 9.27e+00 c.104.1.1 63319 1vbuA 328 9.29e+00 1fgs 428 9.41e+00 1fgs c.59.1.2,c.72.2.2 33959,34962 1gg1A 350 9.47e+00 1qr7A c.1.10.4 29187 1ltqA 301 9.51e+00 c.108.1.9,c.37.1.1 78208,78209 2gtrA 261 9.57e+00 2c6qA 351 9.61e+00 1bia 321 9.89e+00 1bia a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 2g5cA 281 9.92e+00 1yvrA 538 1.00e+01 1vid 221 1.02e+01 1vid c.66.1.1 34178 1x1oA 286 1.05e+01 1qhtA 775 1.06e+01 1tgoA c.55.3.5,e.8.1.1 33722,43011 1wohA 305 1.08e+01 c.42.1.1 109446 2d1sA 548 1.09e+01 2adbA 148 1.10e+01 1j5pA 253 1.10e+01 d.81.1.3,c.2.1.3 71577,83092 1vg0A 650 1.20e+01 c.3.1.3,d.16.1.6 108596,108597 1nhp 447 1.21e+01 1nhp c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 1h1dA 221 1.21e+01 c.66.1.1 83452 1g38A 393 1.22e+01 2admA c.66.1.27 60235 1q35A 320 1.22e+01 c.94.1.1 95661 1j0aA 325 1.22e+01 c.79.1.1 83871 1a7j 290 1.23e+01 1a7j c.37.1.6 31952 1qhoA 686 1.24e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21844,22513,27751,28738 2fw2A 260 1.25e+01 2evwX 166 1.27e+01 1lrzA 426 1.29e+01 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 1ve1A 304 1.29e+01 1n3lA 372 1.32e+01 c.26.1.1 79966 1gg4A 452 1.35e+01 1gg4A c.59.1.1,c.98.1.1,c.72.2.1 33957,58985,58986 2aaa 484 1.35e+01 7taa b.71.1.1,c.1.8.1 27777,28764 1cvrA 435 1.38e+01 1cvrA b.1.18.12,c.17.1.2 21949,31006 1ju2A 536 1.39e+01 c.3.1.2,d.16.1.1 77169,77170 1kv7A 488 1.40e+01 b.6.1.3,b.6.1.3,b.6.1.3 68873,68874,68875 1nvmA 345 1.41e+01 a.5.7.1,c.1.10.5 86249,86250 2blkA 122 1.42e+01 2gokA 429 1.42e+01 1jf8A 131 1.44e+01 c.44.1.1 66621 1ig8A 486 1.45e+01 2yhx c.55.1.3,c.55.1.3 64746,64747 1kfuL 699 1.48e+01 a.39.1.8,b.14.1.1,d.3.1.3 68571,68572,68573 1xs5A 241 1.50e+01 1xfkA 336 1.50e+01 1nhs 447 1.51e+01 1nhp c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 2f02A 323 1.52e+01 1eudA 311 1.53e+01 2scuA c.2.1.8,c.23.4.1 30312,31140 1wlyA 333 1.56e+01 1i58A 189 1.58e+01 1b3qA d.122.1.3 61773 2ap1A 327 1.59e+01 2b4rO 345 1.59e+01 1dl5A 317 1.59e+01 1dl5A c.66.1.7,d.197.1.1 64720,64721 1lwdA 413 1.60e+01 c.77.1.1 78265 2awdA 323 1.60e+01 1j8mF 297 1.60e+01 1ng1 a.24.13.1,c.37.1.10 62742,62743 1gt6A 269 1.62e+01 c.69.1.17 76342 2anuA 255 1.64e+01 1j8yF 297 1.67e+01 1ng1 a.24.13.1,c.37.1.10 62747,62748 1o1yA 239 1.71e+01 c.23.16.1 86554 1zu4A 320 1.71e+01 1vpqA 273 1.72e+01 1f9vA 347 1.73e+01 1bg2 c.37.1.9 59745 1vicA 262 1.75e+01 c.68.1.13 100756 1ve5A 311 1.75e+01 1jb9A 316 1.77e+01 1fnc b.43.4.2,c.25.1.1 62840,62841 1jdpA 441 1.80e+01 c.93.1.1 62906 1jae 471 1.85e+01 1smd b.71.1.1,c.1.8.1 27773,28760 1f8fA 371 1.88e+01 b.35.1.2,c.2.1.1 83246,83247 1wznA 252 1.92e+01 1rvgA 305 1.95e+01 c.1.10.2 97920 1lfpA 249 1.97e+01 e.39.1.1 73885 1vj1A 363 1.97e+01 b.35.1.2,c.2.1.1 100794,100795 2cveA 191 1.97e+01 2frnA 278 1.97e+01 1j96A 323 1.98e+01 c.1.7.1 71616 1rp0A 284 1.98e+01 1udmA 149 1.98e+01 d.109.1.2 107780 1z7lA 276 1.99e+01 2aawA 222 1.99e+01 1qh8A 478 1.99e+01 1qguA c.92.2.3 35633 1tib 269 1.99e+01 3tgl c.69.1.17 34738 1v25A 541 2.00e+01 e.23.1.1 108275 1rkuA 206 2.01e+01 c.108.1.11 97627 1ys7A 233 2.01e+01 1gveA 327 2.03e+01 c.1.7.1 70597 2c5uA 375 2.03e+01 1nu0A 138 2.04e+01 c.55.3.8 92165 2fliA 220 2.09e+01 1j5yA 187 2.10e+01 a.4.5.1,d.94.2.1 71592,71593 1zfjA 491 2.16e+01 1ak5 c.1.5.1,d.37.1.1,d.37.1.1 28638,38540,38541 1bag 425 2.17e+01 1bag b.71.1.1,c.1.8.1 27720,28707 1reqA 727 2.18e+01 1reqA c.1.19.1,c.23.6.1 29620,31247 1zupA 315 2.19e+01 2cwxA 430 2.20e+01 1gpjA 404 2.25e+01 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1chd 203 2.25e+01 1chd c.40.1.1 32478 1yh2A 175 2.27e+01 1qhxA 178 2.31e+01 1qhsA c.37.1.3 31936 1o8bA 219 2.35e+01 c.124.1.4,d.58.40.1 81180,81181 1tksA 204 2.35e+01 d.115.1.2 107114 1uliA 460 2.37e+01 b.33.1.2,d.129.3.3 107921,107922 1xwfA 431 2.38e+01 1vl8A 267 2.39e+01 c.2.1.2 108733 1h65A 270 2.39e+01 c.37.1.8 65640 1fnoA 417 2.43e+01 d.58.19.1,c.56.5.4 70145,75841 1id1A 153 2.43e+01 1id1A c.2.1.9 62286 1lvwA 295 2.44e+01 c.68.1.6 84723 1b0uA 262 2.44e+01 1b0uA c.37.1.12 32370 1qv9A 283 2.48e+01 c.127.1.1 96356 1l0wA 580 2.49e+01 b.40.4.1,d.74.4.1,d.104.1.1 73426,73427,73428 1x0lA 333 2.49e+01 1ctqA 166 2.51e+01 1ctqA c.37.1.8 31965 1wa3A 205 2.51e+01 1oapA 109 2.54e+01 d.79.7.1 92706 1fo1A 271 2.57e+01 1fo1A c.10.2.3,d.58.7.2 30869,39213 1lwjA 441 2.58e+01 b.71.1.1,c.1.8.1 74303,74304 1mwmA 320 2.61e+01 c.55.1.1,c.55.1.1 79580,79581 1p3dA 475 2.63e+01 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 1viaA 175 2.64e+01 c.37.1.2 100754 2fueA 262 2.67e+01 1v37A 177 2.68e+01 1jz8A 1023 2.71e+01 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 67830,67831,67832,67833,67834 1yqzA 438 2.73e+01 1js1X 324 2.73e+01 c.78.1.1,c.78.1.1 71834,71835 1xa0A 328 2.73e+01 1rkxA 357 2.77e+01 c.2.1.2 97631 1dp0A 1023 2.78e+01 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 22073,22074,23722,24346,28845 1zq6A 359 2.81e+01 1yh1A 359 2.81e+01 1onrA 316 2.84e+01 1onrA c.1.10.1 29169 2afbA 351 2.85e+01 1bif 469 2.85e+01 1bif c.37.1.7,c.60.1.4 31961,34003 1j27A 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