Best Alignments for T0338

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
2cchB/T0338-2cchB-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2cchB/T0338-2cchB-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.3159e-261.73e-75
1vin/T0338-1vin-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1vin/T0338-1vin-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.5760e-254.98e-73 1vin a.74.1.1
a.74.1.1
1jkw/T0338-1jkw-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1jkw/T0338-1jkw-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.8225e-246.24e-85 1jkw a.74.1.1
a.74.1.1
1w98B/T0338-1w98B-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1w98B/T0338-1w98B-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.1758e-188.46e-60
1bu2A/T0338-1bu2A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1bu2A/T0338-1bu2A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.2928e-131.16e-56 1bu2A a.74.1.1
a.74.1.1
1c9bA/T0338-1c9bA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1c9bA/T0338-1c9bA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.1571e-122.74e-50 1tfb a.74.1.2
a.74.1.2
1f5qB/T0338-1f5qB-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1f5qB/T0338-1f5qB-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.2759e-111.47e-45 1f5qB a.74.1.1
a.74.1.1
2g9xB/T0338-2g9xB-t2k-global-adpstyle1.a2m 2g9xB/T0338-2g9xB-t2k-global-adpstyle1.al 9.3370e-118.55e-68
2c5nB/T0338-2c5nB-t2k-global-adpstyle1.a2m 2c5nB/T0338-2c5nB-t2k-global-adpstyle1.al 1.2489e-103.00e-67
1d3uB/T0338-1d3uB-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1d3uB/T0338-1d3uB-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.3288e-109.17e-43 1aisB a.74.1.2
a.74.1.2

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001