# List of top-scoring protein chains for T0338.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2g9xB 262 1.81e-35 1vin 268 1.84e-35 1vin a.74.1.1,a.74.1.1 18354,18355 2c5nB 259 4.34e-35 1h1rB 258 4.36e-35 a.74.1.1,a.74.1.1 76490,76491 1oiuB 260 4.37e-35 a.74.1.1,a.74.1.1 103959,103960 1e9hB 261 4.38e-35 a.74.1.1,a.74.1.1 64813,64814 2cchB 260 4.39e-35 1vywB 265 4.65e-35 a.74.1.1,a.74.1.1 108923,108924 1w98B 283 3.00e-28 1jkw 323 9.04e-25 1jkw a.74.1.1,a.74.1.1 18356,18357 1kxu 333 9.09e-25 1jkw a.74.1.1,a.74.1.1 18358,18359 1zp2A 235 5.76e-20 1xo2A 254 6.88e-20 1bu2A 229 1.03e-19 1bu2A a.74.1.1,a.74.1.1 18360,18361 1g3nC 257 2.74e-18 1bu2A a.74.1.1,a.74.1.1 18366,18367 1c9bA 207 3.57e-18 1tfb a.74.1.2,a.74.1.2 18372,18373 1tfb 208 3.70e-18 1tfb a.74.1.2,a.74.1.2 18382,18383 1volA 204 2.21e-17 1tfb a.74.1.2,a.74.1.2 18370,18371 1f5qB 252 2.82e-16 1f5qB a.74.1.1,a.74.1.1 18362,18363 1d3uB 201 5.82e-15 1aisB a.74.1.2,a.74.1.2 18386,18387 1aisB 200 5.88e-15 1aisB a.74.1.2,a.74.1.2 18384,18385 2fwuA 157 6.32e-01 1z1gA 356 3.47e+00 1z1bA 356 3.60e+00 1r29A 127 5.21e+00 d.42.1.1 96856 1azsB 212 5.56e+00 1azsA d.58.29.1 39423 1ab8A 220 5.82e+00 1azsA d.58.29.1 39414 1u2xA 474 6.68e+00 c.72.1.3 107622 1hj5A 567 6.90e+00 1qksA a.3.1.2,b.70.2.1 15927,27684 1e2rA 567 6.99e+00 1qksA a.3.1.2,b.70.2.1 15953,27712 1qksA 567 7.03e+00 1qksA a.3.1.2,b.70.2.1 15951,27710 1pg5A 299 7.37e+00 c.78.1.1,c.78.1.1 104146,104147 1whnA 128 8.24e+00 1eysL 280 8.48e+00 6prcL f.26.1.1 43515 1gq1A 567 8.76e+00 a.3.1.2,b.70.2.1 76264,76265 1zdtA 241 9.04e+00 2bv7A 208 1.14e+01 1tfjA 219 1.15e+01 1wbeA 209 1.23e+01 1w77A 228 1.34e+01 1sv0C 82 1.35e+01 a.60.1.1 106037 1gv4A 528 1.40e+01 c.3.1.5,c.3.1.5,d.87.1.1 70589,70590,70591 2evtA 209 1.41e+01 1oxnA 140 1.50e+01 g.52.1.1 93704 1tw6A 133 1.56e+01 1swxA 209 1.60e+01 a.224.1.1 106075 1c3pA 375 1.65e+01 1c3pA c.42.1.2 32606 1c3rA 375 1.71e+01 1c3pA c.42.1.2 32607 1ymiA 334 1.79e+01 1unlA 292 1.81e+01 2bm1A 691 1.81e+01 1yf6L 281 1.86e+01 1khbA 625 1.94e+01 c.91.1.1,c.109.1.1 68606,68607 1jboB 172 2.01e+01 a.1.1.3 84151 1na7A 329 2.06e+01 d.144.1.7 91752 1jwhA 337 2.07e+01 d.144.1.7 71913 1pjkA 334 2.10e+01 d.144.1.7 88122 1aihA 170 2.24e+01 1aihA d.163.1.1 42149 1nsf 273 2.25e+01 1d2nA c.37.1.20 32429 1nhyA 219 2.26e+01 a.45.1.1,c.47.1.5 80520,80521 1culB 208 2.40e+01 1azsA d.58.29.1 39424 1cjbA 231 2.44e+01 1qk3A c.61.1.1 34079 1tyoA 435 2.47e+01 1ystL 273 2.50e+01 6prcL f.26.1.1 43509 1qovL 281 2.51e+01 6prcL f.26.1.1 43455 1ctt 294 2.54e+01 1ctt c.97.1.1,c.97.1.1 36022,36023 1fnqL 281 2.60e+01 6prcL f.26.1.1 59918 1d2nA 272 2.65e+01 1d2nA c.37.1.20 32428 1rzhL 281 2.68e+01 f.26.1.1 98164 1yowA 242 2.70e+01 1u04A 771 2.72e+01 b.34.14.1,c.55.3.10 107539,107540 2gfvA 427 2.75e+01 2gfwA 427 2.75e+01 1pstL 266 2.75e+01 6prcL f.26.1.1 43503 2gfyA 427 2.77e+01 1ea6A 364 2.82e+01 d.14.1.3,d.122.1.2 64871,64872 1qbkB 890 2.82e+01 1qbkB a.118.1.1 19127 1h7sA 365 2.83e+01 d.14.1.3,d.122.1.2 65705,65706 1f6nL 281 2.86e+01 6prcL f.26.1.1 59660 1ksoA 101 2.87e+01 a.39.1.2 72926 1p7dA 283 2.97e+01 d.163.1.1 94219 1z19A 283 3.04e+01 1fnpL 281 3.09e+01 6prcL f.26.1.1 59914 1l9uH 332 3.11e+01 i.8.1.1 73753 1kas 412 3.12e+01 1dd8A c.95.1.1,c.95.1.1 35964,35965 1k6nL 281 3.17e+01 f.26.1.1 72090 1vmeA 410 3.19e+01 c.23.5.1,d.157.1.3 108893,108894 1jh0L 281 3.23e+01 f.26.1.1 63036 1lw3A 657 3.26e+01 b.55.1.8,c.45.1.3 91152,91153 2d2eA 250 3.30e+01 2fug2 181 3.34e+01 1we1A 240 3.44e+01 2a6hF 423 3.46e+01 1ae9A 179 3.52e+01 1ae9A d.163.1.1 42153 1qtwA 285 3.72e+01 1qumA c.1.15.1 29392 2bv3A 691 3.79e+01 1h4lA 292 4.01e+01 d.144.1.7 70871 1fnmA 691 4.08e+01 1dar b.43.3.1,c.37.1.8,d.14.1.1,d.58.11.1,d.58.11.1 25709,32144,37546,39302,39303 2efgA 691 4.08e+01 1dar b.43.3.1,c.37.1.8,d.14.1.1,d.58.11.1 25708,32143,37548,39301 1dar 691 4.08e+01 1dar b.43.3.1,c.37.1.8,d.14.1.1,d.58.11.1 25707,32142,37547,39300 1h4lD 147 4.49e+01 a.74.1.1 70873 1u83A 276 4.62e+01 c.1.27.1 107732 2bm0A 691 4.63e+01 1gpeA 587 4.66e+01 1gpeA c.3.1.2,d.16.1.1 30387,37951 1unlD 208 4.94e+01 1gg3A 279 5.07e+01 1ef1A a.11.2.1,b.55.1.5,d.15.1.4 16372,27007,37615 1lqaA 346 5.22e+01 c.1.7.1 84674 1aj2 282 5.34e+01 1aj2 c.1.21.1 29665 1kf6B 243 5.44e+01 a.1.2.1,d.15.4.2 72397,72398 1gytA 503 5.45e+01 c.50.1.1,c.56.5.3 70765,70766 1aq5A 47 5.68e+01 1aq5A h.1.6.1 45577 2f1kA 279 5.76e+01 1pk5A 248 5.78e+01 a.123.1.1 88139 1zh7A 243 5.82e+01 3aat 396 5.91e+01 1ajsA c.67.1.1 34346 1mo9A 523 5.93e+01 c.3.1.5,c.3.1.5,d.87.1.1 79341,79342,79343 1g7wA 396 6.03e+01 1ajsA c.67.1.1 34308 2snv 151 6.10e+01 1svpA b.47.1.3 26394 1jcrA 377 6.35e+01 a.118.6.1 66506 1vrnL 273 6.37e+01 9atcA 310 6.38e+01 3csuA c.78.1.1,c.78.1.1 35188,35189 1xxgA 233 6.45e+01 1o5mA 377 6.59e+01 a.118.6.1 92507 1q34A 163 6.60e+01 d.20.1.1 95658 1o1tA 380 6.61e+01 a.118.6.1 86551 1d09A 310 6.67e+01 3csuA c.78.1.1,c.78.1.1 35100,35101 1g7xA 396 6.71e+01 1ajsA c.67.1.1 34304 8atcA 310 6.73e+01 3csuA c.78.1.1,c.78.1.1 35132,35133 1winA 143 6.79e+01 1gh6B 333 6.80e+01 a.74.1.3,a.74.1.3 65192,65193 1ymtA 246 6.82e+01 1xkpB 124 6.88e+01 1k82A 268 6.89e+01 a.156.1.2,b.113.1.1,g.39.1.8 75866,75867,75868 1acmA 310 6.97e+01 3csuA c.78.1.1,c.78.1.1 35180,35181 1xjwA 310 7.00e+01 1j4nA 271 7.08e+01 f.19.1.1 71510 2a0fA 310 7.12e+01 1gq3A 310 7.19e+01 c.78.1.1,c.78.1.1 76268,76269 1f1bA 310 7.21e+01 3csuA c.78.1.1,c.78.1.1 35104,35105 1ekxA 311 7.21e+01 3csuA c.78.1.1,c.78.1.1 35088,35089 3csuA 310 7.24e+01 3csuA c.78.1.1,c.78.1.1 35094,35095 1skuA 310 7.26e+01 c.78.1.1,c.78.1.1 98902,98903 2avnA 260 7.39e+01 1z3dA 157 7.39e+01 1opoA 348 7.39e+01 b.121.4.7 87240 1yqbA 100 7.47e+01 1obbA 480 7.52e+01 c.2.1.5,d.162.1.2 86760,86761 2bsjA 133 7.55e+01 1eiwA 111 7.68e+01 1eiwA c.23.3.1 31130 1cpcB 172 7.70e+01 1qgwC a.1.1.3 15644 1ggwA 140 7.71e+01 1ggwA a.39.1.5 60490 1o69A 394 8.02e+01 c.67.1.4 92560 1z2cB 383 8.02e+01 1yfm 488 8.09e+01 1furA a.127.1.1 19413 1nxzA 246 8.16e+01 b.122.1.2,c.116.1.5 86391,86392 1yokA 256 8.25e+01 1zduA 245 8.27e+01 1vhyA 257 8.28e+01 b.122.1.2,c.116.1.5 100714,100715 1xjjA 644 8.29e+01 1yucA 255 8.34e+01 1m4vA 204 8.34e+01 b.40.2.2,d.15.6.1 74459,74460 1dx0A 219 8.41e+01 1b10A d.6.1.1 37324 1p5jA 372 8.49e+01 c.79.1.1 104067 2biwA 490 8.52e+01 2bshA 125 8.52e+01 1nlnA 204 8.68e+01 d.3.1.7 91962 1cpcL 172 8.69e+01 1qgwC a.1.1.3 15646 1ew3A 159 8.78e+01 1mup b.60.1.1 27114 1ve1A 304 8.87e+01