# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1ri7A 171 4.75e-22 a.4.5.32,d.58.4.2 97504,97505 2cg4A 152 1.45e-19 2cfxA 144 2.03e-16 2a61A 145 8.35e-05 1sfxA 109 1.03e-04 a.4.5.50 105505 1s3jA 155 1.20e-04 a.4.5.28 98437 1ulyA 192 2.34e-04 1xnpA 202 5.15e-04 2fbiA 142 8.55e-04 1je8A 82 1.52e-03 a.4.6.2 77108 2fbhA 146 1.63e-03 1ub9A 100 2.02e-03 a.4.5.28 99159 1q1hA 110 2.59e-03 a.4.5.41 95580 1lj9A 144 2.63e-03 a.4.5.28 78035 1z91A 147 3.96e-03 1lnwA 147 7.80e-03 a.4.5.28 78104 2g7uA 257 8.03e-03 1zljA 78 1.20e-02 2b0lA 102 1.37e-02 1r1tA 122 1.52e-02 a.4.5.5 104769 1u2wA 122 1.60e-02 1jhfA 202 1.65e-02 a.4.5.2,b.87.1.1 63057,63058 1smtA 122 1.79e-02 1smtA a.4.5.5 16109 1xd7A 145 2.57e-02 a.4.5.55 109566 1mkmA 249 3.03e-02 a.4.5.33,d.110.2.2 79242,79243 1bia 321 3.67e-02 1bia a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 1hw5A 210 3.92e-02 2cgpA a.4.5.4,b.82.3.2 16098,28137 2csbA 519 4.27e-02 1i6xA 209 4.75e-02 a.4.5.4,b.82.3.2 83673,83674 1j5yA 187 6.23e-02 a.4.5.1,d.94.2.1 71592,71593 1on2A 142 7.19e-02 a.4.5.24,a.76.1.1 87103,87104 1jgsA 138 7.46e-02 a.4.5.28 66683 1okrA 123 7.86e-02 a.4.5.39 93269 1lvaA 258 1.41e-01 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 1a04A 215 1.50e-01 1a04A a.4.6.2,c.23.1.1 16234,31089 1fseA 74 2.00e-01 1fseA a.4.6.2 60000 1sd4A 126 2.03e-01 a.4.5.39 105428 2fxaA 207 2.10e-01 2ethA 154 2.15e-01 1tqmA 282 3.18e-01 a.4.5.56,d.144.1.9 107236,107237 1xmaA 145 3.44e-01 1p4xA 250 3.57e-01 a.4.5.28,a.4.5.28 87784,87785 1zarA 282 4.19e-01 1hw1A 239 4.55e-01 1e2xA a.4.5.6,a.78.1.1 16111,18441 1in6A 334 4.69e-01 1hqcA a.4.5.11,c.37.1.20 62601,62602 1j75A 67 5.50e-01 a.4.5.19 62673 1zybA 232 5.74e-01 1s7oA 113 6.02e-01 a.4.13.3 105354 1y0uA 96 6.42e-01 1xmkA 79 7.10e-01 1wi9A 72 7.83e-01 1r1uA 106 7.87e-01 a.4.5.5 104771 1qzzA 374 8.60e-01 a.4.5.29,c.66.1.12 96719,96720 2fu4A 83 8.86e-01 1g2hA 61 9.40e-01 1g2hA a.4.1.12 60224 1qbjA 81 1.12e+00 1qbjA a.4.5.19 16155 2cohA 202 1.35e+00 1in4A 334 1.36e+00 1hqcA a.4.5.11,c.37.1.20 62597,62598 1aisB 200 1.37e+00 1aisB a.74.1.2,a.74.1.2 18384,18385 2fswA 107 1.49e+00 1s6lA 212 1.67e+00 1xn7A 78 1.78e+00 2aq4A 434 1.86e+00 6paxA 133 2.00e+00 6paxA a.4.1.5,a.4.1.5 64758,64759 1b0nA 111 2.16e+00 1b0nA a.34.1.1,a.35.1.3 17001,17064 2dtr 226 2.18e+00 1bi0 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1yyvA 131 2.25e+00 1z7uA 112 2.56e+00 1mgtA 174 2.77e+00 1mgtA a.4.2.1,c.55.7.1 16078,33753 1xgsA 295 2.99e+00 1bn5 a.4.5.25,d.127.1.1 16216,41153 2f2eA 146 3.16e+00 1pk5A 248 3.42e+00 a.123.1.1 88139 1k78A 149 3.58e+00 a.4.1.5,a.4.1.5 68255,68256 1hlvA 131 3.74e+00 a.4.1.7,a.4.1.7 65854,65855 1h6zA 913 3.93e+00 c.1.12.2,c.8.1.1,d.142.1.5 70906,70907,70908 1d02A 202 4.14e+00 1d02A c.52.1.8 33313 5nul 138 4.16e+00 5nul c.23.5.1 31191 1n2aA 201 4.32e+00 a.45.1.1,c.47.1.5 91553,91554 2acjA 66 4.47e+00 1fxxA 482 4.72e+00 1fxxA c.55.3.5 33726 2bj7A 138 5.04e+00 1yucA 255 5.36e+00 1han 297 5.54e+00 1han d.32.1.3,d.32.1.3 38506,38507 1p4wA 99 5.67e+00 a.4.6.2 87783 2exrA 524 6.15e+00 2f06A 144 6.25e+00 1xsvA 113 6.59e+00 1rr7A 129 6.90e+00 a.4.1.14 105075 1a0fA 201 6.99e+00 1a0fA a.45.1.1,c.47.1.5 17737,33031 2a6cA 83 7.26e+00 1obbA 480 7.27e+00 c.2.1.5,d.162.1.2 86760,86761 1bbpA 173 7.53e+00 1bbpA b.60.1.1 27147 1bm9A 122 7.71e+00 1bm9A a.4.5.7 16116 1m32A 366 7.77e+00 c.67.1.3 78508 1kw3B 292 7.95e+00 d.32.1.3,d.32.1.3 77549,77550 1lkdA 297 8.53e+00 d.32.1.3,d.32.1.3 78059,78060 1tbxA 99 8.57e+00 a.4.5.48 106748 1tuzA 118 8.84e+00 1xt8A 292 9.33e+00 1cy9A 264 1.02e+01 1ecl e.10.1.1 43236 2g7gA 213 1.03e+01 2tct 207 1.04e+01 2tct a.4.1.9,a.121.1.1 16063,19240 1zk8A 183 1.05e+01 1vfgA 390 1.07e+01 a.173.1.1,d.218.1.4 108570,108571 1js3A 486 1.12e+01 c.67.1.6 67215 1or7A 194 1.17e+01 a.4.13.2,a.177.1.1 87332,87333 1jr7A 311 1.27e+01 b.82.2.3 63255 1u8bA 133 1.29e+01 1qd1A 325 1.31e+01 1qd1A d.58.34.1,d.58.34.1 39493,39494 1t56A 216 1.33e+01 a.4.1.9,a.121.1.1 106428,106429 1sc6A 404 1.36e+01 1ufmA 84 1.39e+01 a.4.5.47 107816 2b06A 155 1.40e+01 1ixcA 294 1.42e+01 a.4.5.37,c.94.1.1 83764,83765 1r7jA 95 1.47e+01 a.4.5.49 104836 1zgwA 139 1.57e+01 1kqfB 294 1.60e+01 d.58.1.5,f.23.22.1 75900,75901 1jggA 60 1.62e+01 2hddA a.4.1.1 62950 1f0lA 535 1.62e+01 1ddt b.2.1.1,d.166.1.1,f.1.2.1 22377,42239,43382 1utxA 66 1.63e+01 a.35.1.3 108034 1b72B 87 1.65e+01 1akhA a.4.1.1 16001 1c3jA 351 1.73e+01 1c3jA c.87.1.1 35459 1p0yA 444 1.79e+01 a.166.1.1,b.85.7.3 87654,87655 2bjcA 62 1.81e+01 1fgyA 127 1.81e+01 1faoA b.55.1.1 26976 1pufB 73 1.83e+01 a.4.1.1 95132 1uz3A 102 1.87e+01 1a6i 217 1.87e+01 2tct a.4.1.9,a.121.1.1 16066,19243 1dik 874 1.91e+01 1dik c.1.12.2,c.8.1.1,d.142.1.5 29304,30702,41572 2f4iA 197 1.97e+01 1dpuA 99 1.98e+01 1dpuA a.4.5.16 16150 1z1dA 103 2.02e+01 1uwwA 191 2.09e+01 b.18.1.23 108079 1yqfA 203 2.10e+01 1r9wA 145 2.10e+01 d.89.1.2 97264 1wwzA 159 2.12e+01 1t6sA 162 2.13e+01 1r69 69 2.39e+01 1r69 a.35.1.2 17028 1tag 324 2.39e+01 1cipA a.66.1.1,c.37.1.8 18197,32080 2f46A 156 2.39e+01 1yw3A 208 2.43e+01 2h21A 440 2.46e+01 2c6qA 351 2.53e+01 2b5aA 77 2.59e+01 1cjgA 62 2.59e+01 1pru a.35.1.5 17112 1omiA 248 2.62e+01 b.82.3.3,a.4.5.4 87079,87080 1kxoA 184 2.66e+01 b.60.1.1 84475 1mzbA 136 2.66e+01 a.4.5.42 91497 1uj6A 227 2.75e+01 c.124.1.4,d.58.40.1 107898,107899 1yq7A 374 2.76e+01 1hfs 160 2.76e+01 1hfc d.92.1.11 40370 1yg2A 179 2.82e+01 1jixA 351 2.87e+01 1c3jA c.87.1.1 63081 1zkoA 136 2.87e+01 1fsz 372 2.92e+01 1fsz c.32.1.1,d.79.2.1 31750,39802 1hy7A 173 2.99e+01 d.92.1.11 65957 1whsA 255 3.00e+01 1ivyA c.69.1.5 34649 1chd 203 3.02e+01 1chd c.40.1.1 32478 1jh6A 189 3.04e+01 d.61.1.1 66707 1louA 101 3.23e+01 1ris d.58.14.1 39323 1g8aA 227 3.23e+01 c.66.1.3 90506 1b9mA 265 3.24e+01 1b9mA a.4.5.8,b.40.6.2,b.40.6.2 16118,58938,58939 1whtA 256 3.26e+01 1ivyA c.69.1.5 34646 1lfkA 398 3.27e+01 a.104.1.1 77926 1xseA 295 3.31e+01 1z0xA 220 3.32e+01 2bznA 351 3.34e+01 1lfpA 249 3.43e+01 e.39.1.1 73885 2a1iA 146 3.43e+01 1dgnA 89 3.59e+01 1dgnA a.77.1.3 18436 1kjnA 157 3.60e+01 c.115.1.1 72614 1rzsA 61 3.64e+01 a.35.1.2 105139 1wdyA 285 3.77e+01 2ao9A 155 3.78e+01 1wpkA 146 3.80e+01 1d5yA 292 3.87e+01 1d5yA a.4.1.8,a.4.1.8,d.60.1.2 16055,16056,39532 1pu6A 218 3.93e+01 a.96.1.5 95123 1yzxA 226 3.99e+01 1jhgA 101 4.11e+01 1jhgA a.4.12.1 19009 1pru 56 4.13e+01 1pru a.35.1.5 17104 1neeA 138 4.17e+01 d.241.1.1,g.59.1.1 91841,91842 1f5aA 513 4.20e+01 1fa0B d.58.16.1,a.160.1.1,d.218.1.3 39337,75835,75836 1adr 76 4.21e+01 1r69 a.35.1.2 17042 1yv5A 374 4.22e+01 1t6cA 315 4.29e+01 c.55.1.8,c.55.1.8 106558,106559 2f1fA 164 4.37e+01 1txoA 237 4.46e+01 1tlk 154 4.48e+01 1tlk b.1.1.4 21707 1oj7A 408 4.49e+01 e.22.1.2 103971 2ae5B 528 4.51e+01 1kblA 873 4.55e+01 c.1.12.2,c.8.1.1,d.142.1.5 68384,68385,68386 1utuA 108 4.56e+01 1qlaB 239 4.57e+01 1qlaB a.1.2.1,d.15.4.2 15679,37707 1or0B 528 4.60e+01 1gxqA 106 4.79e+01 a.4.6.1 70721 1t95A 240 4.86e+01 a.5.8.1,d.235.1.2,d.58.11.3 106705,106706,106707 1u5xA 140 4.91e+01 1vk1A 242 4.92e+01 d.268.1.2 108634 1w23A 360 4.93e+01 1n25A 368 4.98e+01 c.37.1.20 85264 2a10A 125 5.00e+01 1q79A 514 5.02e+01 a.160.1.1,d.218.1.3,d.58.16.1 104548,104549,104550 1txuA 273 5.05e+01 a.222.1.1 107439 2ex3B 264 5.28e+01 1pzlA 237 5.34e+01 a.123.1.1 104393 1fpzA 212 5.41e+01 1fpzA c.45.1.1 59976 2bnmA 198 5.44e+01 1b6a 478 5.45e+01 1bn5 a.4.5.25,d.127.1.1 16223,41160 1k4nA 192 5.46e+01 d.32.1.5 72059 1jnyA 435 5.50e+01 b.43.3.1,b.44.1.1,c.37.1.8 66982,66983,66984 1k8tA 510 5.54e+01 e.41.1.1 68316 1rh9A 373 5.54e+01 1vjoA 393 5.57e+01 c.67.1.3 100827 1jg8A 347 5.63e+01 1jg8A c.67.1.1 62946 1zzcA 198 5.67e+01 1rk8A 165 5.69e+01 d.58.7.1 97603 1tadA 324 5.70e+01 1cipA a.66.1.1,c.37.1.8 18194,32077 1hr6A 475 5.72e+01 1hr6A d.185.1.1,d.185.1.1 61164,61165 2c27A 315 5.83e+01 2ax3A 502 5.86e+01 1dwkA 156 5.87e+01 1dw9A a.35.1.4,d.72.1.1 17075,39606 2fsxA 148 5.88e+01 1ne2A 200 5.88e+01 c.66.1.32 85586 1p9qC 256 5.91e+01 a.5.8.1,d.235.1.2,d.58.11.3 104093,104094,104095 1n93X 375 6.04e+01 a.206.1.1 91707 1iab 200 6.04e+01 1iae d.92.1.8 40312 1m6sA 347 6.13e+01 c.67.1.1 78701 1zx4A 192 6.16e+01 2bgcA 238 6.18e+01 1vmbA 140 6.21e+01 1azo 232 6.22e+01 1azo c.52.1.14 33329 2a74A 643 6.26e+01 1v05A 96 6.26e+01 2guhA 214 6.28e+01 1y5mA 276 6.29e+01 1jayA 212 6.35e+01 c.2.1.6 66478 1n3gA 113 6.37e+01 d.204.1.1 79962 1svmA 377 6.41e+01 1s69A 124 6.42e+01 a.1.1.1 105305 1pgjA 478 6.43e+01 2pgd a.100.1.1,c.2.1.6 18783,30195 1ddgA 374 6.52e+01 1amoA b.43.4.1,c.25.1.4 25671,31559 1lk5A 229 6.61e+01 c.124.1.4,d.58.40.1 73960,73961 1wa8B 95 6.74e+01 1a62 130 6.75e+01 1a62 a.140.3.1,b.40.4.5 64708,64709 1v7bA 185 6.87e+01 1wyuA 438 6.90e+01 1z77A 200 6.92e+01 2g3bA 208 6.95e+01 1p0hA 318 6.96e+01 d.108.1.1 93866 1l8bA 190 6.97e+01 d.86.1.1 73683 1khbA 625 6.99e+01 c.91.1.1,c.109.1.1 68606,68607 1vlwA 217 7.00e+01 c.1.10.1 108868 1sqsA 242 7.00e+01 c.23.5.5 98968 1fp1D 372 7.06e+01 1fpqA a.4.5.29,c.66.1.12 59939,59940 2g0dA 409 7.24e+01 1i1iP 681 7.33e+01 1i1iP d.92.1.5 40297 1v95A 130 7.35e+01 c.51.1.1 108435 1rtxA 123 7.40e+01 a.1.1.1 97827 1h3qA 140 7.44e+01 d.110.4.3 76652 1w25A 459 7.45e+01 1bs0A 384 7.49e+01 1bs0A c.67.1.4 34490 1mml 265 7.50e+01 1mml e.8.1.2 43015 1j6wA 175 7.63e+01 1j98A d.185.1.2 62663 1nhs 447 7.64e+01 1nhp c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 1heiA 451 7.67e+01 1heiA c.37.1.14,c.37.1.14 32463,32464 1exbA 332 7.67e+01 1qrqA c.1.7.1 28666 1iae 200 7.72e+01 1iae d.92.1.8 40311 1imjA 210 7.84e+01 c.69.1.23 71246 1sdoA 203 7.90e+01 c.52.1.21 98809 1gvdA 52 7.99e+01 a.4.1.3 83338 1p3jA 217 8.00e+01 c.37.1.1,g.41.2.1 94022,94023 1x46A 150 8.00e+01 1xuuA 349 8.01e+01 1jsmA 325 8.03e+01 b.19.1.2 63264 1fhgA 154 8.15e+01 1tlk b.1.1.4 21706 2aj0A 71 8.29e+01 1bl0A 129 8.29e+01 1d5yA a.4.1.8,a.4.1.8 16053,16054 1squA 155 8.31e+01 d.252.1.1 98971 1psdA 409 8.32e+01 1psdA c.2.1.4,c.23.12.1,d.58.18.1 30097,31357,39354 1sw5A 275 8.43e+01 c.94.1.1 106069 1qipA 183 8.49e+01 1qipA d.32.1.1 38470 1m1hA 248 8.50e+01 b.114.1.1,d.58.42.1 78415,78416 1zzoA 136 8.60e+01 1bjaA 95 8.62e+01 1bjaA a.4.5.9 16122 1o54A 277 8.76e+01 c.66.1.13 92482 1w3uA 362 8.84e+01 1vmoA 163 8.87e+01 1vmoA b.77.1.1 27974 1j7gA 144 8.89e+01 c.110.1.1 84130 1opc 110 8.92e+01 1opc a.4.6.1 16231 1z6nA 167 8.93e+01 1r71A 178 8.96e+01 a.4.14.1 104823 1n5nA 180 8.98e+01 d.167.1.1 85336