Best Alignments for T0336

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
2bptA/T0336-2bptA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2bptA/T0336-2bptA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.4333e-186.41e-71
1qgrA/T0336-1qgrA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1qgrA/T0336-1qgrA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.7091e-138.23e-72 1qgrA a.118.1.1
1bk6A/T0336-1bk6A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1bk6A/T0336-1bk6A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.1028e-096.51e-84 1bk5A a.118.1.1
1ee4A/T0336-1ee4A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1ee4A/T0336-1ee4A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.4112e-092.33e-84 1ee4A a.118.1.1
1wa5B/T0336-1wa5B-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1wa5B/T0336-1wa5B-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.4652e-085.37e-74
1qbkB/T0336-1qbkB-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1qbkB/T0336-1qbkB-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.2503e-085.05e-37 1qbkB a.118.1.1
1b3uA/T0336-1b3uA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1b3uA/T0336-1b3uA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 9.1206e-074.79e-54 1b3uA a.118.1.2
1gw5B/T0336-1gw5B-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1gw5B/T0336-1gw5B-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.5696e-053.72e-44 a.118.1.10
1oyzA/T0336-1oyzA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1oyzA/T0336-1oyzA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.3093e-041.06e-36 a.118.1.16
1xqrA/T0336-1xqrA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1xqrA/T0336-1xqrA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.7872e-045.70e-42

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001