Best Alignments for T0336

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1ee4A/T0336-1ee4A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1ee4A/T0336-1ee4A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.7933e-202.33e-84 1ee4A a.118.1.1
1bk6A/T0336-1bk6A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1bk6A/T0336-1bk6A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.8405e-206.51e-84 1bk5A a.118.1.1
1wa5B/T0336-1wa5B-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1wa5B/T0336-1wa5B-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.1820e-195.37e-74
1b3uA/T0336-1b3uA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1b3uA/T0336-1b3uA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.4190e-144.79e-54 1b3uA a.118.1.2
1qgrA/T0336-1qgrA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1qgrA/T0336-1qgrA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.3761e-138.86e-49 1qgrA a.118.1.1
2bptA/T0336-2bptA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2bptA/T0336-2bptA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.7180e-124.36e-39
1gw5B/T0336-1gw5B-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1gw5B/T0336-1gw5B-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.2846e-113.72e-44 a.118.1.10
2c1tA/T0336-2c1tA-t2k-local-adpstyle1.a2m 2c1tA/T0336-2c1tA-t2k-local-adpstyle1.al 2.1367e-101.67e-43
2c1mA/T0336-2c1mA-t2k-local-adpstyle1.a2m 2c1mA/T0336-2c1mA-t2k-local-adpstyle1.al 2.7896e-105.76e-43
1y2aC/T0336-1y2aC-t2k-local-adpstyle1.a2m 1y2aC/T0336-1y2aC-t2k-local-adpstyle1.al 2.7916e-105.78e-43

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001