Best Alignments for T0336

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
2bptA/T0336-2bptA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2bptA/T0336-2bptA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 9.6939e-266.41e-71
1b3uA/T0336-1b3uA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1b3uA/T0336-1b3uA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.9355e-031.00e-08 1b3uA a.118.1.2
1xqrA/T0336-1xqrA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1xqrA/T0336-1xqrA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.8529e-021.24e-16
1xqsA/T0336-1xqsA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1xqsA/T0336-1xqsA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.5640e-021.69e-14
1ee4A/T0336-1ee4A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1ee4A/T0336-1ee4A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.3727e-022.11e-14 1ee4A a.118.1.1
1qgrA/T0336-1qgrA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1qgrA/T0336-1qgrA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.1076e-028.23e-72 1qgrA a.118.1.1
1wa5B/T0336-1wa5B-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1wa5B/T0336-1wa5B-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.5585e-011.08e-12
1qbkB/T0336-1qbkB-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1qbkB/T0336-1qbkB-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.5430e-015.05e-37 1qbkB a.118.1.1
1oyzA/T0336-1oyzA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1oyzA/T0336-1oyzA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.8523e-011.29e-09 a.118.1.16
1wa5C/T0336-1wa5C-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1wa5C/T0336-1wa5C-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.8506e+004.47e-12

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001