# List of top-scoring protein chains for t06-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2bptA 861 2.29e-30 1b3uA 588 2.86e-02 1b3uA a.118.1.2 19135 1wa5C 960 8.83e-02 1oyzA 280 1.90e-01 a.118.1.16 93775 1eyhA 144 3.16e-01 1eduA a.118.9.1 19214 1rtwA 220 3.47e-01 a.132.1.3 97823 1xqsA 280 3.48e-01 1xqrA 296 3.88e-01 1gw5A 621 5.01e-01 a.118.1.10 70629 1ee4A 423 5.02e-01 1ee4A a.118.1.1 19128 1lqtA 456 6.17e-01 c.3.1.1,c.4.1.1 74198,74199 1wa5B 530 1.28e+00 1vp2A 208 1.38e+00 1xnfA 275 1.94e+00 1wkbA 810 2.13e+00 1ei5A 520 2.49e+00 1ei5A b.61.3.1,b.61.3.1,e.3.1.1 27418,27419,42772 1cb8A 678 2.67e+00 1cb8A a.102.3.2,b.24.1.1,b.30.5.2 18849,23898,24422 1tuaA 191 2.68e+00 d.51.1.1,d.51.1.1 107321,107322 1e5dA 402 3.24e+00 1e5dA c.23.5.1,d.157.1.3 31208,42061 1vrmA 325 3.57e+00 1dekA 241 3.74e+00 1dekA c.37.1.1 31842 2a4aA 281 4.63e+00 1ps1A 337 5.30e+00 1ps1A a.128.1.4 19450 1qsaA 618 5.67e+00 1qsaA a.118.5.1,d.2.1.6 19182,36988 1ux5A 411 5.83e+00 a.207.1.1 100144 1n5uA 585 7.08e+00 a.126.1.1,a.126.1.1,a.126.1.1 85339,85340,85341 1k78A 149 7.34e+00 a.4.1.5,a.4.1.5 68255,68256 1upkA 341 7.59e+00 a.118.1.15 99758 2g2dA 193 7.78e+00 1gzsB 165 8.06e+00 a.168.1.1 76425 2arcA 164 9.02e+00 2arcA b.82.4.1 28148 1tn6A 382 9.12e+00 1bkpA 278 9.13e+00 1bkpA d.117.1.1 41029 2f4nA 273 9.24e+00 1sglA 209 9.40e+00 d.124.1.1 105536 2fl7A 232 9.69e+00 1jdhA 529 9.86e+00 a.118.1.1 66549 1p35A 299 9.93e+00 1p35A b.28.1.1 23925 1g0cA 364 1.02e+01 7a3hA c.1.8.3 60165 1wosA 364 1.02e+01 b.44.2.1,d.250.1.1 109468,109469 1tvlA 454 1.03e+01 c.1.16.4 107366 1icpA 376 1.09e+01 1oyc c.1.4.1 62270 1rcwA 231 1.12e+01 a.132.1.4 97299 1r6fA 310 1.12e+01 e.46.1.1 97149 2ca6A 386 1.18e+01 1f3vA 179 1.24e+01 1f3vA d.58.22.1 39382 1r0pA 312 1.34e+01 d.144.1.7 96734 1obbA 480 1.36e+01 c.2.1.5,d.162.1.2 86760,86761 3il8 72 1.36e+01 1tvxA d.9.1.1 37356 1w19A 160 1.38e+01 1d8bA 81 1.49e+01 1d8bA a.60.8.1 18094 1or4A 178 1.57e+01 a.1.1.2 93447 1hu3A 260 1.58e+01 1hu3A a.118.1.14 19137 1r5rA 119 1.58e+01 a.39.2.1 97104 1i88A 389 1.74e+01 c.95.1.2,c.95.1.2 66070,66071 2fnaA 357 1.90e+01 1r8eA 278 1.96e+01 a.6.1.3,d.60.1.1 104843,104844 1ls1A 295 1.96e+01 a.24.13.1,c.37.1.10 78170,78171 2gfpA 375 1.98e+01 1y0uA 96 2.02e+01 1sx7A 164 2.02e+01 2etvA 346 2.03e+01 1hw1A 239 2.05e+01 1e2xA a.4.5.6,a.78.1.1 16111,18441 2czlA 272 2.05e+01 2apoA 357 2.12e+01 1lrv 244 2.17e+01 1lrv a.118.1.5 19146 1ebfA 358 2.30e+01 1ebuA c.2.1.3,d.81.1.2 30033,39948 1knqA 175 2.30e+01 c.37.1.17 72786 2b5dX 528 2.41e+01 1nbuA 119 2.61e+01 d.96.1.3 91767 1jk0B 345 2.62e+01 a.25.1.2 63143 1mp1A 111 2.66e+01 a.188.1.1 91382 1e8gA 560 2.67e+01 1qltA d.58.32.1,d.145.1.1 39455,41718 1a2pA 110 2.79e+01 1b20A d.1.1.2 36140 2fx0A 201 2.87e+01 1ffyA 917 2.94e+01 1qu2A a.27.1.1,b.51.1.1,c.26.1.1 16926,26891,31593 1nnwA 252 2.95e+01 d.159.1.5 80674 1mxmA 254 3.03e+01 b.38.1.3,d.58.43.1,f.34.1.1 79647,79648,79649 2freA 200 3.05e+01 2fiqA 420 3.07e+01 1ckmA 330 3.24e+01 1ckmA b.40.4.6,d.142.2.3 25358,41585 1sw6A 327 3.34e+01 1sw6A d.211.1.1 19176 1td6A 306 3.35e+01 1zy4A 303 3.44e+01 1w9cA 321 3.51e+01 1hqkA 154 3.53e+01 c.16.1.1 65902 1ve3A 227 3.55e+01 1v54E 109 3.56e+01 a.118.11.1 100326 2b7aA 293 3.59e+01 1dqeA 137 3.71e+01 1dqeA a.39.2.1 17388 1r03A 182 3.71e+01 a.25.1.1 104675 2cygA 312 3.73e+01 1v8dA 235 3.75e+01 c.140.1.1 108425 1ks9A 291 3.78e+01 a.100.1.7,c.2.1.6 68857,68858 1ukuA 102 3.82e+01 d.58.5.2 99533 1ummA 172 3.83e+01 a.3.1.1 107958 1vmeA 410 3.84e+01 c.23.5.1,d.157.1.3 108893,108894 1wstA 417 3.87e+01 1wd5A 208 3.91e+01 2c8sA 172 3.99e+01 1dvpA 220 4.04e+01 1dvpA a.118.9.2,g.50.1.1 19216,45358 1wzvA 155 4.11e+01 1g1tA 157 4.21e+01 d.169.1.1,g.3.11.1 65104,65105 1gouA 116 4.27e+01 d.1.1.2 65429 1t33A 224 4.28e+01 a.4.1.9,a.121.1.1 106295,106296 1k7kA 221 4.32e+01 c.51.4.1 72104 1z5hA 780 4.38e+01 2azjA 289 4.39e+01 1lj5A 379 4.42e+01 e.1.1.1 73928 1s1qA 145 4.44e+01 d.20.1.2 98351 1fpoA 171 4.54e+01 1fpoA a.2.3.1,a.23.1.1 15693,16487 1o26A 232 4.58e+01 d.207.1.1 86566 1bbhA 131 4.58e+01 1bbhA a.24.3.2 16546 1u5kA 244 4.62e+01 1vpjA 192 4.65e+01 2fywA 267 4.77e+01 1swxA 209 4.88e+01 a.224.1.1 106075 1zosA 230 4.97e+01 1ju3A 583 5.01e+01 b.18.1.13,c.69.1.21 67300,67301 1mvcA 240 5.02e+01 a.123.1.1 79499 1ti6B 274 5.11e+01 b.3.5.1,d.58.1.5 106976,106977 1ytlA 174 5.27e+01 1qwnA 1045 5.32e+01 a.8.3.1,b.30.5.6,c.6.2.1 96487,96488,96489 2f5uA 447 5.36e+01 1wdyA 285 5.43e+01 1w61A 414 5.56e+01 2cvbA 188 5.56e+01 1n9eA 787 5.67e+01 b.30.2.1,d.17.2.1,d.17.2.1 91708,91709,91710 1r3sA 367 5.71e+01 c.1.22.1 96963 1n7oA 721 5.72e+01 a.102.3.2,b.24.1.1,b.30.5.2 80259,80260,80261 1uzeA 589 5.74e+01 d.92.1.5 108174 1cv8 174 5.80e+01 1cv8 d.3.1.1 37089 1gvfA 286 5.81e+01 c.1.10.2 70599 1qgtA 149 5.85e+01 1qgtA a.62.1.1 18135 1ualA 274 5.85e+01 c.116.1.4 88383 2gfoA 396 5.85e+01 1bl0A 129 5.88e+01 1d5yA a.4.1.8,a.4.1.8 16053,16054 1odoA 408 5.93e+01 a.104.1.1 92783 1ydmA 187 5.97e+01 1ei9A 279 6.04e+01 1ei9A c.69.1.13 34713 1hziA 129 6.06e+01 1rcb a.26.1.2 61449 2grrB 170 6.07e+01 1vkeA 133 6.33e+01 a.152.1.2 108650 1yz7A 188 6.48e+01 1gpjA 404 6.48e+01 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1aop 497 6.49e+01 2aop d.58.36.1,d.58.36.1,d.134.1.1,d.134.1.1 39501,39502,41425,41426 1jf9A 408 6.52e+01 1c0nA c.67.1.3 62931 1gvnB 287 6.55e+01 c.37.1.21 76354 2d48A 129 6.61e+01 1x6mA 196 6.62e+01 1qusA 322 6.65e+01 1ltm d.2.1.6 36991 1gs9A 165 6.66e+01 a.24.1.1 83313 1q8cA 151 6.68e+01 a.79.1.2 96202 2ex3B 264 6.68e+01 2sqcA 631 6.68e+01 2sqcA a.102.4.2,a.102.4.2 18854,18855 2c2xA 281 6.80e+01 1p5dX 463 6.96e+01 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1zc6A 305 6.96e+01 1vkhA 273 6.98e+01 c.69.1.32 108662 1wg8A 285 7.00e+01 1odzA 386 7.04e+01 c.1.8.3 86889 1x91A 153 7.04e+01 1bob 320 7.06e+01 1bob d.108.1.1 40816 1u9yA 284 7.20e+01 1f9vA 347 7.25e+01 1bg2 c.37.1.9 59745 1sjwA 144 7.26e+01 d.17.4.9 98899 1v9tA 166 7.30e+01 b.62.1.1 108451 1t4aA 84 7.32e+01 d.284.1.1 106404 2au5A 139 7.33e+01 1jssA 224 7.42e+01 d.129.3.2 71844 1eca 136 7.50e+01 1flp a.1.1.2 15209 1nuyA 337 7.55e+01 e.7.1.1 86213 1e9gA 286 7.62e+01 1wgjA b.40.5.1 59393 1h7eA 245 7.70e+01 c.68.1.13 60717 1vf1A 229 7.74e+01 1uj8A 77 8.02e+01 1u9cA 224 8.08e+01 1w8kA 447 8.11e+01 2bikB 313 8.15e+01 1e6bA 221 8.23e+01 1e6bA a.45.1.1,c.47.1.5 59294,59295 1rh9A 373 8.37e+01 1twfB 1224 8.37e+01 5eau 548 8.43e+01 5eat a.102.4.1,a.128.1.3 18851,19443 1jdc 429 8.53e+01 1jdc b.71.1.1,c.1.8.1 27789,28776 1i2aA 219 8.54e+01 e.24.1.1 90660 1rkiA 102 8.55e+01 1j96A 323 8.62e+01 c.1.7.1 71616 1m48A 133 8.66e+01 a.26.1.2 74443 1xfrA 128 8.67e+01 1ryp1 222 8.79e+01 1ryp1 1h0pA 182 8.94e+01 b.62.1.1 76450 1l9kA 305 8.94e+01 c.66.1.25 84569