# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1qgrA 876 1.56e-29 1qgrA a.118.1.1 19119 2bptA 861 2.34e-24 1ibrB 462 3.03e-21 1qgrA a.118.1.1 19120 1qbkB 890 2.63e-17 1qbkB a.118.1.1 19127 1ee4A 423 3.72e-07 1ee4A a.118.1.1 19128 1wa5B 530 4.32e-06 1xqsA 280 5.18e-03 1xqrA 296 1.21e-02 1oyzA 280 1.85e-02 a.118.1.16 93775 1b3uA 588 2.87e-01 1b3uA a.118.1.2 19135 1upkA 341 4.56e-01 a.118.1.15 99758 1bkpA 278 5.66e-01 1bkpA d.117.1.1 41029 1i7wA 538 6.45e-01 3bct a.118.1.1 61909 1eyhA 144 8.67e-01 1eduA a.118.9.1 19214 1gw5A 621 1.20e+00 a.118.1.10 70629 1n2aA 201 2.05e+00 a.45.1.1,c.47.1.5 91553,91554 1jdhA 529 2.69e+00 a.118.1.1 66549 1qqeA 292 2.74e+00 1qqeA a.118.8.1 19210 1a0fA 201 2.93e+00 1a0fA a.45.1.1,c.47.1.5 17737,33031 3ertA 261 3.88e+00 3erdA a.123.1.1 19292 1z5hA 780 4.48e+00 1lqtA 456 4.49e+00 c.3.1.1,c.4.1.1 74198,74199 1irdB 146 5.00e+00 a.1.1.2 66287 2g3bA 208 5.12e+00 1babB 146 5.14e+00 1abwA a.1.1.2 15414 2bdwA 362 5.24e+00 1gd8A 118 5.34e+00 d.188.1.1 60445 1pvgA 418 5.69e+00 d.14.1.3,d.122.1.2 95161,95162 1iwhB 146 5.85e+00 a.1.1.2 76883 1pbgA 468 6.18e+00 1e70M c.1.8.4 28946 2d5xB 146 6.54e+00 2bbhA 269 6.81e+00 1lrv 244 7.08e+00 1lrv a.118.1.5 19146 2aexA 346 7.13e+00 2a4dA 160 7.55e+00 1vp2A 208 7.58e+00 1t5hX 504 8.27e+00 e.23.1.1 106449 1vhnA 318 8.36e+00 c.1.4.1 100693 1cv8 174 9.13e+00 1cv8 d.3.1.1 37089 1gv3A 248 9.27e+00 a.2.11.1,d.44.1.1 70585,70586 2sqcA 631 9.96e+00 2sqcA a.102.4.2,a.102.4.2 18854,18855 1j7dA 145 9.96e+00 1jatB d.20.1.1 62680 1s1fA 406 1.03e+01 1xpcA 248 1.22e+01 1ouvA 273 1.22e+01 a.118.18.1 93570 1n9eA 787 1.24e+01 b.30.2.1,d.17.2.1,d.17.2.1 91708,91709,91710 1j9yA 385 1.24e+01 1j9yA c.1.8.3 62791 1vg0A 650 1.30e+01 c.3.1.3,d.16.1.6 108596,108597 2b69A 343 1.30e+01 1tuaA 191 1.30e+01 d.51.1.1,d.51.1.1 107321,107322 1bob 320 1.36e+01 1bob d.108.1.1 40816 1dvpA 220 1.37e+01 1dvpA a.118.9.2,g.50.1.1 19216,45358 1w19A 160 1.38e+01 1nsf 273 1.39e+01 1d2nA c.37.1.20 32429 1w9cA 321 1.39e+01 1i6aA 219 1.43e+01 c.94.1.1 61827 1odzA 386 1.44e+01 c.1.8.3 86889 1n6zA 105 1.53e+01 d.263.1.1 85369 1xm0A 147 1.54e+01 1jssA 224 1.60e+01 d.129.3.2 71844 1i6iA 366 1.62e+01 1bg2 c.37.1.9 61844 2d0eA 407 1.69e+01 1ceo 343 1.69e+01 1ceo c.1.8.3 28808 1wa5C 960 1.79e+01 1ld8A 382 1.83e+01 a.118.6.1 73838 1e5dA 402 1.85e+01 1e5dA c.23.5.1,d.157.1.3 31208,42061 2freA 200 1.86e+01 1d2nA 272 1.86e+01 1d2nA c.37.1.20 32428 1p5hA 428 1.88e+01 c.123.1.1 87802 1vl5A 260 1.92e+01 c.66.1.41 108720 1nbfA 353 1.95e+01 d.3.1.9 80387 1esgA 213 2.04e+01 1bam c.52.1.3 33286 2gfoA 396 2.09e+01 1vc1A 110 2.18e+01 c.13.2.1 108493 1lfaA 187 2.18e+01 1ido c.62.1.1 34122 1wkuA 254 2.35e+01 1tn6A 382 2.43e+01 1p3wA 404 2.43e+01 c.67.1.3 87752 1ps1A 337 2.47e+01 1ps1A a.128.1.4 19450 1szhA 161 2.58e+01 a.226.1.1 106157 2fbiA 142 2.58e+01 1vfvA 366 2.71e+01 c.37.1.9 108592 2d09A 407 2.79e+01 1dljA 402 2.79e+01 1dliA a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 1swxA 209 2.85e+01 a.224.1.1 106075 1sly 618 2.85e+01 1qsaA a.118.5.1,d.2.1.6 19184,36990 1vrmA 325 2.87e+01 1w33A 181 2.92e+01 2gx9A 129 2.94e+01 1sftA 388 3.08e+01 1bd0A b.49.2.2,c.1.6.1 26482,28644 1e6bA 221 3.12e+01 1e6bA a.45.1.1,c.47.1.5 59294,59295 1wvqA 167 3.24e+01 1tfjA 219 3.30e+01 103m 154 3.35e+01 1a6m a.1.1.2 15124 1d8dA 377 3.35e+01 1ft1A a.118.6.1 19185 1mym 154 3.36e+01 1a6m a.1.1.2 15054 1l9kA 305 3.42e+01 c.66.1.25 84569 1w78A 422 3.60e+01 1t06A 235 3.64e+01 a.118.1.17 106194 1ho8A 480 3.65e+01 1ho8A a.118.1.9 61107 1bkdS 439 3.73e+01 1bkdS a.117.1.1 19111 1eg5A 384 3.74e+01 1ecxA c.67.1.3 34429 2carA 196 3.81e+01 1mlg 154 3.82e+01 1a6m a.1.1.2 15104 1cb8A 678 3.83e+01 1cb8A a.102.3.2,b.24.1.1,b.30.5.2 18849,23898,24422 1pzlA 237 3.86e+01 a.123.1.1 104393 7a3hA 303 3.99e+01 7a3hA c.1.8.3 28817 1k28A 584 4.00e+01 b.40.8.1,b.108.1.2,d.2.1.3 68049,68050,68051 1x6mA 196 4.17e+01 1ois 223 4.25e+01 1a36A e.15.1.1 43267 1fpoA 171 4.32e+01 1fpoA a.2.3.1,a.23.1.1 15693,16487 2mgg 154 4.34e+01 1a6m a.1.1.2 15069 1oaoC 729 4.47e+01 e.26.1.3 86746 1jj2I 145 4.48e+01 1ffkG c.21.1.1 63094 1qsaA 618 4.56e+01 1qsaA a.118.5.1,d.2.1.6 19182,36988 2fb1A 226 4.58e+01 1zzmA 259 4.66e+01 1v4xA 144 4.66e+01 a.1.1.2 108363 1u7iA 136 4.70e+01 d.32.1.7 107724 1xiuA 230 4.71e+01 3bamA 213 4.74e+01 1bam c.52.1.3 33288 1wdyA 285 4.79e+01 1vggA 161 4.80e+01 2mgb 154 4.80e+01 1a6m a.1.1.2 15102 1eny 268 4.80e+01 1eny c.2.1.2 29910 1vdyA 140 4.83e+01 1spgA 144 4.83e+01 1abwA a.1.1.2 15409 1mod 154 4.88e+01 1a6m a.1.1.2 15107 1wbeA 209 4.90e+01 1k4tA 592 4.95e+01 a.2.8.1,d.163.1.2,e.15.1.1 77263,77264,77265 1k07A 263 5.00e+01 d.157.1.1 77218 1zupA 315 5.13e+01 2au3A 407 5.16e+01 1zwwA 256 5.22e+01 2a19B 284 5.22e+01 1mjnA 179 5.25e+01 c.62.1.1 79210 1hdoA 206 5.55e+01 1he2A c.2.1.2 60965 1zymA 258 5.56e+01 1zymA a.60.10.1,c.8.1.2 18110,30705 1bd0A 388 5.58e+01 1bd0A b.49.2.2,c.1.6.1 26480,28642 1zy4A 303 5.72e+01 1vzyA 291 5.77e+01 1mlo 154 5.91e+01 1a6m a.1.1.2 15085 1h7eA 245 5.94e+01 c.68.1.13 60717 1aisB 200 6.05e+01 1aisB a.74.1.2,a.74.1.2 18384,18385 1wdnA 226 6.06e+01 1lst c.94.1.1 35816 1t3qC 288 6.12e+01 d.87.2.1,d.145.1.3 106371,106372 1oe4A 247 6.15e+01 c.18.1.3 86895 1mll 154 6.23e+01 1a6m a.1.1.2 15057 1xcbA 211 6.32e+01 a.4.5.38,c.2.1.12 109552,109553 1a12A 413 6.34e+01 1a12A b.69.5.1 27663 2azjA 289 6.51e+01 1vhuA 211 6.52e+01 c.50.1.2 100703 2spl 154 6.58e+01 1a6m a.1.1.2 15047 1a6m 151 6.61e+01 1a6m a.1.1.2 15018 2ac3A 316 6.75e+01 1ry6A 360 6.81e+01 c.37.1.9 98090 1bzpA 153 6.84e+01 1a6m a.1.1.2 15020 1tc1A 220 6.87e+01 1tc1A c.61.1.1 34083 1zxmA 400 6.94e+01 1k7kA 221 7.00e+01 c.51.4.1 72104 1dlyA 164 7.03e+01 1dlyA a.1.1.1 14983 1obbA 480 7.19e+01 c.2.1.5,d.162.1.2 86760,86761 1d1gA 168 7.38e+01 1d1gA c.71.1.1 34889 1hrhA 136 7.40e+01 1rthA c.55.3.1 33577 1wmuA 141 7.40e+01 a.1.1.2 109416 2b1eA 564 7.42e+01 2aq8A 269 7.51e+01 1gcvA 140 7.53e+01 1cg5B a.1.1.2 15410 1i3dA 146 7.61e+01 a.1.1.2 61587 1fmjA 351 7.66e+01 c.37.1.5 59879 1wosA 364 7.66e+01 b.44.2.1,d.250.1.1 109468,109469 1tu9A 134 7.78e+01 a.1.1.2 107320 1yz7A 188 7.82e+01 1ei5A 520 7.84e+01 1ei5A b.61.3.1,b.61.3.1,e.3.1.1 27418,27419,42772 1r0pA 312 7.98e+01 d.144.1.7 96734 2pia 321 8.05e+01 2pia b.43.4.2,c.25.1.2,d.15.4.2 25663,31553,37704 1u2zA 433 8.14e+01 c.66.1.31 107626 1go3F 107 8.19e+01 a.60.8.2 65407 1lw3A 657 8.20e+01 b.55.1.8,c.45.1.3 91152,91153 1nu4A 97 8.20e+01 d.58.7.1 80731 1e6wA 260 8.46e+01 1e6wA c.2.1.2 59326 1jf9A 408 8.47e+01 1c0nA c.67.1.3 62931 1urnA 97 8.52e+01 1urnA d.58.7.1 39153 1dz4A 414 8.58e+01 1phd a.104.1.1 18903 1bpoA 494 8.78e+01 1bpoA a.118.1.4,b.69.6.1 19143,27670 1b93A 152 8.84e+01 1b93A c.24.1.2 31507 1v5xA 203 8.91e+01 c.1.2.4 100377 2frfA 153 8.92e+01 1dwtA 153 8.99e+01 1a6m a.1.1.2 15190 1yrcA 414 8.99e+01