Best Alignments for T0335

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1t95A/T0335-1t95A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1t95A/T0335-1t95A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.2751e+004.47e-14 a.5.8.1
d.235.1.2
d.58.11.3
1f47B/T0335-1f47B-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1f47B/T0335-1f47B-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.1372e+002.93e-05 1f46A d.129.4.1
1b5sA/T0335-1b5sA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1b5sA/T0335-1b5sA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.5165e+005.02e-01 1eaf c.43.1.1
1gzqA/T0335-1gzqA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1gzqA/T0335-1gzqA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.0698e+002.39e-04 b.1.1.2
d.19.1.1
1avsA/T0335-1avsA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1avsA/T0335-1avsA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.4161e+001.15e-08 1cll a.39.1.5
1y96B/T0335-1y96B-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1y96B/T0335-1y96B-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.4991e+003.46e+00
1xhdA/T0335-1xhdA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1xhdA/T0335-1xhdA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.9856e+004.51e-06
1oyc/T0335-1oyc-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1oyc/T0335-1oyc-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.1409e+002.53e+00 1oyc c.1.4.1
2aexA/T0335-2aexA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2aexA/T0335-2aexA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.1811e+001.02e-01
1ap4/T0335-1ap4-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1ap4/T0335-1ap4-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.4676e+003.02e-09 1ncx a.39.1.5

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001