# TARGET T0335 # Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net # This is a 4-layer network, with # window units # 5 15 # 7 15 # 9 15 # 13 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0335.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(-1 bits/column, 1) # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 53 # Pos AA E B G H T C 10N 1S 5N 5N 5N 5N 5N 5N 1 M 0.012 0.005 0.002 0.013 0.160 0.808 2 I 0.042 0.070 0.002 0.036 0.087 0.762 3 S 0.019 0.010 0.001 0.087 0.055 0.828 4 N 0.001 0.001 0.004 0.961 0.009 0.025 5 A 0.001 0.001 0.003 0.974 0.012 0.010 6 K 0.001 0.001 0.004 0.981 0.009 0.005 7 I 0.001 0.001 0.002 0.991 0.003 0.003 8 A 0.001 0.001 0.001 0.987 0.007 0.005 9 R 0.001 0.001 0.001 0.990 0.004 0.005 10 I 0.001 0.001 0.001 0.995 0.001 0.004 11 N 0.001 0.001 0.001 0.998 0.001 0.001 12 E 0.001 0.001 0.001 0.996 0.002 0.002 13 L 0.001 0.001 0.001 0.993 0.003 0.003 14 A 0.001 0.001 0.001 0.988 0.005 0.006 15 A 0.001 0.001 0.001 0.977 0.008 0.013 16 K 0.001 0.001 0.002 0.964 0.019 0.015 17 A 0.001 0.001 0.003 0.932 0.039 0.025 18 K 0.001 0.002 0.008 0.797 0.113 0.079 19 A 0.001 0.002 0.015 0.720 0.179 0.082 20 G 0.001 0.001 0.029 0.559 0.251 0.159 21 V 0.001 0.003 0.016 0.230 0.206 0.543 22 I 0.001 0.006 0.006 0.095 0.165 0.727 23 T 0.001 0.003 0.003 0.088 0.085 0.820 24 E 0.001 0.001 0.005 0.946 0.021 0.028 25 E 0.001 0.001 0.006 0.958 0.025 0.011 26 E 0.001 0.001 0.003 0.970 0.018 0.008 27 K 0.001 0.001 0.002 0.980 0.012 0.006 28 A 0.001 0.001 0.001 0.974 0.014 0.010 29 E 0.001 0.001 0.001 0.970 0.012 0.017 30 Q 0.001 0.001 0.001 0.985 0.004 0.010 31 Q 0.001 0.001 0.001 0.982 0.007 0.011 32 K 0.001 0.001 0.001 0.988 0.004 0.007 33 L 0.001 0.001 0.002 0.973 0.010 0.016 34 R 0.001 0.001 0.001 0.987 0.005 0.006 35 Q 0.001 0.001 0.001 0.983 0.007 0.009 36 E 0.001 0.001 0.001 0.986 0.005 0.007 37 Y 0.001 0.001 0.001 0.981 0.006 0.012 38 L 0.001 0.001 0.001 0.991 0.003 0.004 39 K 0.001 0.001 0.001 0.990 0.004 0.004 40 G 0.001 0.001 0.001 0.990 0.004 0.005 41 F 0.001 0.001 0.001 0.993 0.002 0.004 42 R 0.001 0.001 0.001 0.995 0.002 0.002 43 S 0.001 0.001 0.001 0.992 0.003 0.003 44 S 0.001 0.001 0.002 0.991 0.003 0.003 45 M 0.001 0.001 0.002 0.994 0.003 0.002 46 K 0.001 0.001 0.005 0.987 0.006 0.002 47 N 0.001 0.001 0.013 0.964 0.016 0.006 48 T 0.004 0.001 0.023 0.908 0.044 0.020 49 L 0.020 0.010 0.073 0.717 0.152 0.029 50 K 0.032 0.006 0.088 0.348 0.383 0.143 51 S 0.068 0.001 0.056 0.113 0.436 0.327 52 V 0.506 0.014 0.012 0.021 0.176 0.271 53 K 0.766 0.013 0.002 0.004 0.038 0.177 54 I 0.896 0.006 0.001 0.002 0.019 0.075 55 I 0.883 0.043 0.001 0.001 0.015 0.058 56 D 0.362 0.054 0.004 0.006 0.536 0.039 57 P 0.013 0.001 0.007 0.006 0.960 0.013 58 E 0.005 0.002 0.003 0.002 0.978 0.010 59 G 0.014 0.014 0.002 0.002 0.950 0.019 60 N 0.182 0.039 0.002 0.006 0.257 0.515 61 D 0.268 0.220 0.004 0.006 0.117 0.385 62 V 0.112 0.174 0.002 0.010 0.150 0.552 63 T 0.011 0.009 0.001 0.019 0.069 0.891 64 P 0.001 0.001 0.016 0.967 0.008 0.009 65 E 0.001 0.001 0.012 0.977 0.008 0.002 66 K 0.001 0.001 0.007 0.989 0.004 0.001 67 L 0.001 0.001 0.001 0.997 0.001 0.001 68 K 0.001 0.001 0.001 0.999 0.001 0.001 69 R 0.001 0.001 0.001 0.998 0.001 0.001 70 E 0.001 0.001 0.001 0.998 0.002 0.001 71 Q 0.001 0.001 0.001 0.997 0.002 0.001 72 R 0.001 0.001 0.001 0.992 0.005 0.002 73 N 0.001 0.001 0.003 0.972 0.014 0.011 74 N 0.001 0.001 0.004 0.893 0.027 0.074 75 K 0.002 0.002 0.002 0.045 0.089 0.859 76 L 0.018 0.015 0.015 0.027 0.218 0.707 77 H 0.102 0.012 0.042 0.030 0.297 0.517 78 L 0.161 0.023 0.151 0.030 0.357 0.278 79 E 0.138 0.012 0.072 0.017 0.305 0.455 80 H 0.055 0.015 0.054 0.011 0.374 0.491 81 H 0.023 0.010 0.019 0.009 0.561 0.377 82 H 0.009 0.004 0.019 0.008 0.405 0.555 83 H 0.033 0.021 0.017 0.018 0.361 0.551 84 H 0.049 0.018 0.008 0.020 0.253 0.653 85 H 0.003 0.006 0.001 0.004 0.027 0.959