# TARGET T0335 # Using neural net t06-IDGaaH13-3-13-7-13-9-13-11-n_sep-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 20 (1 n_sep ) # The input amino acid frequencies were determined from # alignment T0335.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 10.3373 # Pos AA G H I J K L M N P Q R S T U V W A B C D 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.107 0.110 0.017 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.043 0.014 0.090 0.613 2 I 0.056 0.175 0.008 0.003 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.047 0.009 0.103 0.595 3 S 0.047 0.183 0.006 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.019 0.008 0.091 0.640 4 N 0.038 0.178 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.018 0.012 0.060 0.692 5 A 0.043 0.172 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.030 0.162 0.586 6 K 0.048 0.327 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.021 0.206 0.391 7 I 0.007 0.841 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.011 0.135 8 A 0.002 0.908 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.005 0.081 9 R 0.003 0.945 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.048 10 I 0.004 0.977 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.016 11 N 0.003 0.975 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.001 0.016 12 E 0.007 0.932 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.007 0.001 0.051 13 L 0.005 0.937 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.008 0.002 0.044 14 A 0.007 0.937 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.011 0.004 0.040 15 A 0.018 0.926 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.011 0.001 0.042 16 K 0.026 0.898 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.014 0.001 0.059 17 A 0.042 0.846 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.019 0.002 0.089 18 K 0.050 0.799 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.025 0.002 0.118 19 A 0.080 0.672 0.028 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.033 0.006 0.175 20 G 0.186 0.395 0.015 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.008 0.084 0.008 0.303 21 V 0.438 0.093 0.062 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.008 0.065 0.011 0.318 22 I 0.116 0.063 0.165 0.079 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.050 0.010 0.068 0.449 23 T 0.014 0.013 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.022 0.003 0.313 0.628 24 E 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.011 0.001 0.017 0.967 25 E 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.015 0.011 0.412 0.558 26 E 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.912 0.077 27 K 0.009 0.847 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.007 0.133 28 A 0.001 0.915 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.006 0.076 29 E 0.003 0.912 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.008 0.070 30 Q 0.007 0.964 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.002 0.023 31 Q 0.002 0.969 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.025 32 K 0.002 0.936 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.001 0.056 33 L 0.002 0.958 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.001 0.033 34 R 0.005 0.961 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.001 0.025 35 Q 0.003 0.975 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.019 36 E 0.004 0.962 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.001 0.028 37 Y 0.006 0.957 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.007 0.001 0.027 38 L 0.008 0.955 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.007 0.001 0.021 39 K 0.025 0.910 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.013 0.002 0.047 40 G 0.044 0.830 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.019 0.001 0.104 41 F 0.063 0.817 0.016 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.012 0.001 0.090 42 R 0.017 0.877 0.014 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.003 0.082 43 S 0.019 0.796 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.009 0.005 0.164 44 S 0.033 0.765 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.013 0.004 0.182 45 M 0.035 0.842 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.016 0.005 0.094 46 K 0.021 0.878 0.015 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.010 0.004 0.069 47 N 0.043 0.760 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.032 0.008 0.151 48 T 0.184 0.570 0.015 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.069 0.003 0.156 49 L 0.165 0.657 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.028 0.004 0.134 50 K 0.057 0.286 0.051 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.265 0.073 0.054 0.213 51 S 0.199 0.065 0.010 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.103 0.079 0.055 0.476 52 V 0.470 0.051 0.011 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.095 0.037 0.019 0.313 53 K 0.008 0.032 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.001 0.001 0.793 0.006 0.031 0.119 54 I 0.007 0.011 0.004 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.030 0.092 0.097 0.015 0.176 0.008 0.088 0.467 55 I 0.003 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.825 0.004 0.044 0.113 56 D 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.092 0.473 0.169 0.003 0.001 0.001 0.001 0.001 0.063 0.003 0.029 0.163 57 P 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.055 0.004 0.040 0.898 58 E 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.006 0.824 0.161 59 G 0.446 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.241 0.166 0.139 60 N 0.179 0.149 0.004 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.032 0.023 0.220 0.386 61 D 0.038 0.025 0.058 0.002 0.048 0.008 0.002 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.063 0.013 0.153 0.581 62 V 0.055 0.020 0.008 0.006 0.001 0.327 0.003 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.079 0.007 0.084 0.403 63 T 0.025 0.011 0.002 0.001 0.001 0.001 0.078 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.017 0.005 0.351 0.505 64 P 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.998 65 E 0.001 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.003 0.345 0.639 66 K 0.098 0.026 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.493 0.375 67 L 0.061 0.826 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.003 0.108 68 K 0.015 0.886 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.007 0.087 69 R 0.007 0.892 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.002 0.095 70 E 0.007 0.910 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.007 0.002 0.073 71 Q 0.004 0.946 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.003 0.043 72 R 0.003 0.961 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.001 0.025 73 N 0.009 0.953 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.009 0.001 0.027 74 N 0.052 0.757 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.115 0.001 0.069 75 K 0.435 0.160 0.053 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.192 0.006 0.151 76 L 0.011 0.026 0.650 0.073 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.011 0.003 0.043 0.184 77 H 0.011 0.019 0.002 0.020 0.030 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.245 0.004 0.081 0.582 78 L 0.033 0.021 0.001 0.001 0.004 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.077 0.005 0.059 0.780 79 E 0.029 0.036 0.002 0.001 0.001 0.001 0.002 0.002 0.001 0.001 0.001 0.001 0.002 0.002 0.002 0.003 0.294 0.008 0.142 0.472 80 H 0.073 0.033 0.001 0.001 0.001 0.001 0.001 0.002 0.003 0.002 0.002 0.001 0.002 0.002 0.002 0.002 0.133 0.011 0.123 0.607 81 H 0.073 0.105 0.005 0.001 0.001 0.001 0.001 0.001 0.003 0.002 0.001 0.001 0.002 0.002 0.002 0.002 0.193 0.013 0.079 0.512 82 H 0.056 0.086 0.006 0.001 0.001 0.001 0.001 0.001 0.004 0.003 0.002 0.001 0.003 0.002 0.002 0.002 0.107 0.012 0.090 0.622 83 H 0.102 0.064 0.008 0.001 0.003 0.001 0.001 0.001 0.004 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.079 0.016 0.073 0.641 84 H 0.052 0.047 0.003 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.044 0.010 0.063 0.772 85 H 0.071 0.050 0.007 0.001 0.002 0.001 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.055 0.016 0.092 0.695