# TARGET T0335 # Using neural net t2k-5740-IDaaHr-5-15-7-15-9-15-13-ebghstl-seeded.net # This is a 4-layer network, with # window units # 5 15 # 7 15 # 9 15 # 13 7 (1 EBGHSTL ) # The input amino acid frequencies were determined from # alignment T0335.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(-1 bits/column, 1) # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 53 # Pos AA E B G H S T C 10N 1S 5N 5N 5N 5N 5N 5N 5N 1 M 0.001 0.001 0.001 0.001 0.001 0.001 0.998 2 I 0.004 0.030 0.003 0.032 0.004 0.014 0.914 3 S 0.001 0.002 0.002 0.073 0.062 0.009 0.852 4 N 0.001 0.001 0.008 0.951 0.007 0.020 0.013 5 A 0.001 0.001 0.006 0.959 0.009 0.019 0.007 6 K 0.001 0.001 0.001 0.989 0.001 0.006 0.002 7 I 0.001 0.001 0.001 0.995 0.001 0.003 0.001 8 A 0.001 0.001 0.001 0.997 0.001 0.002 0.001 9 R 0.001 0.001 0.001 0.996 0.001 0.003 0.001 10 I 0.001 0.001 0.001 0.998 0.001 0.001 0.001 11 N 0.001 0.001 0.001 0.993 0.001 0.006 0.001 12 E 0.001 0.001 0.001 0.985 0.001 0.014 0.001 13 L 0.001 0.001 0.001 0.982 0.002 0.013 0.003 14 A 0.001 0.001 0.001 0.972 0.002 0.021 0.004 15 A 0.001 0.001 0.001 0.948 0.010 0.023 0.018 16 K 0.001 0.001 0.002 0.943 0.019 0.014 0.022 17 A 0.001 0.001 0.003 0.936 0.017 0.025 0.018 18 K 0.001 0.001 0.008 0.871 0.015 0.077 0.027 19 A 0.001 0.002 0.013 0.627 0.041 0.282 0.035 20 G 0.001 0.001 0.008 0.093 0.060 0.792 0.046 21 V 0.001 0.003 0.006 0.019 0.022 0.636 0.313 22 I 0.001 0.001 0.001 0.001 0.006 0.001 0.993 23 T 0.001 0.001 0.001 0.002 0.004 0.001 0.993 24 E 0.001 0.001 0.012 0.941 0.011 0.021 0.014 25 E 0.001 0.001 0.010 0.967 0.002 0.014 0.008 26 E 0.001 0.001 0.004 0.957 0.001 0.004 0.034 27 K 0.001 0.001 0.001 0.994 0.001 0.002 0.003 28 A 0.001 0.001 0.001 0.979 0.004 0.010 0.006 29 E 0.001 0.001 0.001 0.975 0.002 0.019 0.004 30 Q 0.001 0.001 0.001 0.981 0.005 0.008 0.006 31 Q 0.001 0.001 0.001 0.988 0.002 0.007 0.002 32 K 0.001 0.001 0.001 0.983 0.002 0.013 0.002 33 L 0.001 0.001 0.001 0.986 0.002 0.007 0.005 34 R 0.001 0.001 0.001 0.993 0.001 0.004 0.002 35 Q 0.001 0.001 0.001 0.994 0.002 0.004 0.001 36 E 0.001 0.001 0.001 0.993 0.001 0.005 0.001 37 Y 0.001 0.001 0.001 0.991 0.001 0.007 0.001 38 L 0.001 0.001 0.001 0.991 0.001 0.006 0.001 39 K 0.001 0.001 0.001 0.987 0.001 0.012 0.001 40 G 0.001 0.001 0.001 0.979 0.001 0.018 0.001 41 F 0.001 0.001 0.001 0.986 0.001 0.008 0.002 42 R 0.001 0.001 0.002 0.990 0.001 0.005 0.001 43 S 0.001 0.001 0.004 0.980 0.001 0.014 0.001 44 S 0.001 0.001 0.005 0.947 0.001 0.045 0.001 45 M 0.002 0.001 0.007 0.949 0.006 0.029 0.006 46 K 0.003 0.001 0.049 0.905 0.005 0.029 0.008 47 N 0.012 0.001 0.069 0.778 0.016 0.111 0.013 48 T 0.014 0.004 0.128 0.589 0.013 0.226 0.026 49 L 0.099 0.031 0.064 0.224 0.163 0.196 0.223 50 K 0.099 0.002 0.052 0.060 0.205 0.435 0.147 51 S 0.284 0.002 0.018 0.010 0.158 0.446 0.083 52 V 0.742 0.002 0.001 0.002 0.021 0.008 0.223 53 K 0.930 0.005 0.001 0.001 0.007 0.001 0.057 54 I 0.899 0.002 0.001 0.001 0.009 0.001 0.088 55 I 0.834 0.021 0.001 0.001 0.021 0.003 0.120 56 D 0.247 0.011 0.004 0.001 0.021 0.007 0.710 57 P 0.011 0.001 0.022 0.001 0.054 0.873 0.037 58 E 0.002 0.001 0.016 0.002 0.050 0.914 0.014 59 G 0.014 0.005 0.025 0.003 0.501 0.247 0.206 60 N 0.025 0.010 0.008 0.003 0.395 0.120 0.439 61 D 0.111 0.115 0.008 0.003 0.280 0.073 0.410 62 V 0.112 0.110 0.003 0.003 0.177 0.012 0.583 63 T 0.025 0.008 0.001 0.003 0.095 0.004 0.865 64 P 0.002 0.001 0.039 0.799 0.044 0.044 0.070 65 E 0.001 0.001 0.022 0.947 0.007 0.016 0.006 66 K 0.001 0.001 0.015 0.966 0.004 0.008 0.006 67 L 0.001 0.001 0.003 0.982 0.002 0.004 0.008 68 K 0.001 0.001 0.002 0.982 0.002 0.009 0.004 69 R 0.001 0.001 0.001 0.980 0.002 0.013 0.004 70 E 0.001 0.001 0.001 0.974 0.007 0.009 0.009 71 Q 0.001 0.001 0.002 0.974 0.006 0.008 0.009 72 R 0.001 0.001 0.005 0.964 0.004 0.019 0.008 73 N 0.001 0.001 0.007 0.881 0.007 0.096 0.007 74 N 0.001 0.001 0.006 0.265 0.012 0.711 0.006 75 K 0.001 0.003 0.012 0.070 0.050 0.788 0.076 76 L 0.005 0.019 0.022 0.035 0.139 0.077 0.702 77 H 0.023 0.033 0.058 0.040 0.223 0.181 0.442 78 L 0.020 0.015 0.055 0.023 0.237 0.208 0.441 79 E 0.019 0.037 0.040 0.022 0.249 0.056 0.576 80 H 0.031 0.063 0.035 0.031 0.154 0.042 0.644 81 H 0.017 0.007 0.127 0.063 0.119 0.298 0.368 82 H 0.010 0.009 0.131 0.053 0.246 0.280 0.272 83 H 0.009 0.027 0.079 0.051 0.389 0.104 0.342 84 H 0.008 0.015 0.029 0.046 0.018 0.124 0.759 85 H 0.001 0.001 0.001 0.001 0.001 0.001 0.996