# TARGET T0335 # Using neural net t06-IDGaaH13-3-13-7-13-9-13-11-ebghstl-dssp-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 7 (1 EBGHSTL ) # The input amino acid frequencies were determined from # alignment T0335.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 12.359 # Pos AA E B G H S T C 10N 1S 5N 5N 5N 5N 5N 5N 5N 1 M 0.001 0.001 0.001 0.004 0.001 0.001 0.993 2 I 0.013 0.022 0.009 0.216 0.005 0.026 0.709 3 S 0.008 0.004 0.022 0.526 0.054 0.077 0.308 4 N 0.002 0.001 0.029 0.780 0.037 0.086 0.065 5 A 0.002 0.001 0.014 0.909 0.022 0.024 0.029 6 K 0.001 0.001 0.005 0.967 0.004 0.008 0.013 7 I 0.001 0.001 0.001 0.988 0.002 0.002 0.005 8 A 0.001 0.001 0.001 0.992 0.001 0.003 0.002 9 R 0.001 0.001 0.001 0.991 0.001 0.007 0.001 10 I 0.001 0.001 0.001 0.995 0.001 0.004 0.001 11 N 0.001 0.001 0.001 0.992 0.001 0.005 0.001 12 E 0.001 0.001 0.001 0.983 0.001 0.014 0.001 13 L 0.001 0.001 0.003 0.957 0.002 0.034 0.004 14 A 0.001 0.001 0.007 0.896 0.004 0.078 0.013 15 A 0.001 0.001 0.017 0.760 0.014 0.164 0.044 16 K 0.003 0.003 0.041 0.640 0.052 0.126 0.135 17 A 0.006 0.003 0.080 0.578 0.056 0.142 0.135 18 K 0.007 0.006 0.081 0.514 0.107 0.146 0.140 19 A 0.009 0.007 0.145 0.291 0.105 0.307 0.136 20 G 0.011 0.003 0.087 0.127 0.170 0.464 0.138 21 V 0.019 0.010 0.048 0.060 0.177 0.283 0.404 22 I 0.014 0.030 0.002 0.011 0.222 0.012 0.709 23 T 0.003 0.012 0.001 0.005 0.018 0.001 0.960 24 E 0.001 0.001 0.015 0.966 0.001 0.016 0.002 25 E 0.001 0.001 0.030 0.956 0.001 0.012 0.001 26 E 0.001 0.001 0.012 0.981 0.001 0.004 0.003 27 K 0.001 0.001 0.001 0.994 0.001 0.004 0.001 28 A 0.001 0.001 0.001 0.989 0.001 0.009 0.001 29 E 0.001 0.001 0.001 0.979 0.001 0.017 0.002 30 Q 0.001 0.001 0.001 0.986 0.001 0.008 0.004 31 Q 0.001 0.001 0.001 0.985 0.001 0.013 0.001 32 K 0.001 0.001 0.001 0.969 0.001 0.029 0.001 33 L 0.001 0.001 0.001 0.963 0.001 0.030 0.005 34 R 0.001 0.001 0.001 0.990 0.001 0.006 0.003 35 Q 0.001 0.001 0.001 0.995 0.001 0.003 0.001 36 E 0.001 0.001 0.001 0.992 0.001 0.007 0.001 37 Y 0.001 0.001 0.001 0.989 0.001 0.009 0.001 38 L 0.001 0.001 0.001 0.994 0.001 0.004 0.001 39 K 0.001 0.001 0.001 0.993 0.001 0.006 0.001 40 G 0.001 0.001 0.001 0.988 0.001 0.011 0.001 41 F 0.001 0.001 0.001 0.986 0.001 0.010 0.002 42 R 0.001 0.001 0.002 0.986 0.001 0.009 0.002 43 S 0.001 0.001 0.001 0.971 0.001 0.026 0.001 44 S 0.001 0.001 0.002 0.952 0.002 0.040 0.005 45 M 0.001 0.001 0.004 0.966 0.002 0.020 0.007 46 K 0.001 0.001 0.017 0.935 0.008 0.030 0.008 47 N 0.003 0.001 0.036 0.855 0.008 0.089 0.008 48 T 0.008 0.002 0.063 0.685 0.027 0.185 0.030 49 L 0.044 0.012 0.087 0.440 0.100 0.131 0.186 50 K 0.074 0.003 0.070 0.127 0.249 0.331 0.146 51 S 0.268 0.006 0.064 0.115 0.117 0.306 0.123 52 V 0.577 0.006 0.009 0.041 0.027 0.015 0.324 53 K 0.850 0.011 0.005 0.021 0.011 0.004 0.098 54 I 0.916 0.005 0.002 0.008 0.006 0.003 0.059 55 I 0.740 0.046 0.002 0.007 0.051 0.007 0.148 56 D 0.100 0.008 0.001 0.001 0.051 0.001 0.840 57 P 0.003 0.001 0.016 0.002 0.089 0.857 0.032 58 E 0.001 0.003 0.016 0.001 0.051 0.916 0.013 59 G 0.010 0.013 0.083 0.004 0.470 0.216 0.203 60 N 0.025 0.033 0.054 0.009 0.151 0.256 0.473 61 D 0.071 0.184 0.037 0.005 0.173 0.181 0.349 62 V 0.066 0.119 0.012 0.007 0.245 0.042 0.509 63 T 0.022 0.034 0.002 0.008 0.125 0.009 0.801 64 P 0.001 0.001 0.047 0.896 0.005 0.036 0.014 65 E 0.001 0.001 0.028 0.950 0.002 0.017 0.003 66 K 0.001 0.001 0.032 0.952 0.001 0.008 0.006 67 L 0.001 0.001 0.009 0.972 0.002 0.008 0.008 68 K 0.001 0.001 0.004 0.971 0.003 0.013 0.007 69 R 0.001 0.001 0.005 0.961 0.003 0.025 0.005 70 E 0.001 0.001 0.005 0.944 0.006 0.031 0.013 71 Q 0.004 0.003 0.010 0.889 0.016 0.048 0.031 72 R 0.004 0.004 0.019 0.785 0.023 0.119 0.046 73 N 0.003 0.002 0.025 0.638 0.030 0.251 0.052 74 N 0.004 0.002 0.028 0.436 0.097 0.290 0.142 75 K 0.012 0.006 0.042 0.324 0.141 0.259 0.216 76 L 0.042 0.021 0.057 0.231 0.144 0.124 0.382 77 H 0.072 0.029 0.067 0.227 0.114 0.125 0.366 78 L 0.069 0.021 0.098 0.218 0.114 0.133 0.345 79 E 0.062 0.018 0.111 0.173 0.133 0.161 0.343 80 H 0.048 0.015 0.109 0.121 0.161 0.157 0.389 81 H 0.040 0.016 0.090 0.121 0.170 0.195 0.367 82 H 0.035 0.015 0.085 0.078 0.195 0.230 0.363 83 H 0.028 0.015 0.054 0.053 0.222 0.196 0.433 84 H 0.018 0.014 0.022 0.028 0.053 0.101 0.763 85 H 0.003 0.001 0.002 0.002 0.008 0.003 0.981