# List of top-scoring protein chains for t06-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1t3wA 148 1.29e-01 1xhdA 173 2.87e-01 1y96B 85 5.22e-01 2fbhA 146 5.74e-01 1lj9A 144 6.84e-01 a.4.5.28 78035 2beqD 48 7.92e-01 1wdtA 665 9.01e-01 2au5A 139 1.46e+00 1ofcX 304 1.66e+00 a.4.1.3,a.4.1.13,a.187.1.1 92826,92827,92828 1l8dA 112 1.86e+00 h.4.12.1 73687 1v3wA 173 1.87e+00 b.81.1.5 100291 2gboA 104 2.00e+00 2a6sA 84 3.14e+00 1avsA 90 3.34e+00 1cll a.39.1.5 17226 1nrlA 316 3.48e+00 a.123.1.1 92091 1f32A 149 3.62e+00 1f32A d.62.1.1 39539 2bskB 90 3.67e+00 2c2aA 258 3.80e+00 1sczA 233 3.88e+00 c.43.1.1 98802 1czqA 46 4.43e+00 1czqA h.3.2.1 45720 1yzmA 51 4.77e+00 1dp3A 55 4.84e+00 1dp3A a.55.1.2 59128 2es4D 332 5.01e+00 1olmA 403 5.04e+00 a.5.3.1,b.132.1.1,c.13.1.1 104008,104009,104010 1wy1A 172 5.07e+00 1t95A 240 5.12e+00 a.5.8.1,d.235.1.2,d.58.11.3 106705,106706,106707 1dpsA 167 5.17e+00 1dpsA a.25.1.1 16716 2bezF 42 5.34e+00 1r1hA 696 5.58e+00 d.92.1.4 104756 2fji1 399 5.90e+00 2ap3A 199 5.93e+00 1v1dA 31 5.95e+00 2c5kT 95 6.43e+00 1wmhA 89 6.47e+00 1wmiB 67 7.05e+00 1wlqC 201 7.42e+00 a.4.5.52 109400 1o6dA 163 7.67e+00 c.116.1.3 92567 1qwoA 442 7.73e+00 c.60.1.2 104620 1ic2A 81 7.82e+00 h.1.5.1 62247 1go3F 107 8.29e+00 a.60.8.2 65407 1tgrA 52 8.46e+00 1sknP 92 8.67e+00 1sknP a.37.1.1 17127 1jixA 351 8.87e+00 1c3jA c.87.1.1 63081 1ggzA 148 8.88e+00 a.39.1.5 70176 1lnwA 147 9.36e+00 a.4.5.28 78104 1pmzA 86 9.45e+00 a.39.1.10 104195 2es9A 115 9.59e+00 2f3yA 148 9.62e+00 1yy7A 213 1.06e+01 1useA 45 1.16e+01 2dd8S 202 1.17e+01 1f46A 140 1.24e+01 1f46A d.129.4.1 59643 1nmeA 146 1.25e+01 c.17.1.1 85874 1fy7A 278 1.26e+01 1fy7A d.108.1.1 40817 2fueA 262 1.26e+01 1eca 136 1.27e+01 1flp a.1.1.2 15209 1zavU 30 1.36e+01 1v77A 212 1.36e+01 c.6.3.2 108402 1tmxA 293 1.36e+01 1jnmA 62 1.41e+01 h.1.3.1 84181 1wdpA 495 1.44e+01 2aukA 190 1.45e+01 1rgxA 114 1.47e+01 g.77.1.1 104932 1wdcC 156 1.61e+01 1wdcC a.39.1.5 17317 1pcfA 66 1.61e+01 1pcfA d.18.1.1 38142 1k5nA 276 1.63e+01 b.1.1.2,d.19.1.1 77266,77267 1yzyA 413 1.76e+01 2fu2A 102 1.81e+01 1tdpA 111 1.86e+01 a.29.8.1 106781 1eumA 165 1.99e+01 1eumA a.25.1.1 59507 1hfeS 123 2.00e+01 1hfeS a.137.4.1 19640 1nt2B 258 2.01e+01 a.183.1.1 86150 2erbA 125 2.10e+01 1nf3A 195 2.11e+01 c.37.1.8 85594 1winA 143 2.15e+01 1tzyD 103 2.17e+01 a.22.1.1 107533 1xhnA 184 2.17e+01 1nkpA 88 2.22e+01 a.38.1.1 80573 2fsjA 346 2.31e+01 1z0pA 84 2.32e+01 1gs9A 165 2.35e+01 a.24.1.1 83313 1m1eB 81 2.36e+01 a.161.1.1 78400 1q4rA 112 2.37e+01 d.58.4.4 95823 2ajrA 331 2.38e+01 1v30A 124 2.44e+01 1aj8A 371 2.44e+01 1aj8A a.103.1.1 18900 1b0nB 57 2.46e+01 1b0nB a.34.1.1 17002 2f6mA 65 2.49e+01 1iomA 377 2.52e+01 a.103.1.1 83698 2bm8A 236 2.54e+01 1wq3A 322 2.54e+01 1xcrA 316 2.55e+01 1iwmA 186 2.62e+01 b.125.1.2 83758 1upvA 257 2.68e+01 2a26A 50 2.72e+01 1vzjA 40 2.74e+01 1vr5A 547 2.77e+01 1vd3A 217 2.79e+01 2cq8A 110 2.86e+01 2ar0A 541 2.87e+01 2cq2A 114 2.90e+01 2af4C 333 2.90e+01 1fcqA 350 2.94e+01 c.1.8.9 65006 1qy6A 274 2.95e+01 b.47.1.1 96574 1iz5A 249 2.97e+01 d.131.1.2,d.131.1.2 83834,83835 1j30A 144 3.01e+01 a.25.1.1 90806 1w7jB 151 3.01e+01 1wi6A 88 3.06e+01 1sfxA 109 3.08e+01 a.4.5.50 105505 1n1jA 93 3.09e+01 a.22.1.3 79813 1xzoA 174 3.14e+01 1ztpA 251 3.17e+01 1vqoV 71 3.17e+01 1iioA 84 3.19e+01 a.39.4.1 66150 1h8eA 510 3.23e+01 1skyB a.69.1.1,b.49.1.1,c.37.1.11 60738,60739,60740 1zp4A 304 3.27e+01 1fjgK 129 3.29e+01 1fjfK c.55.4.1 33733 1vjvA 415 3.34e+01 d.3.1.9 108632 1g8iA 190 3.35e+01 1rec a.39.1.5 60363 1wq6A 72 3.37e+01 1fzcA 87 3.42e+01 1fzcA h.1.8.1 45590 1jmtA 104 3.45e+01 d.58.7.3 63180 1snnA 227 3.51e+01 d.115.1.2 105821 1o5uA 101 3.52e+01 b.82.1.8 92518 1em8B 112 3.56e+01 c.126.1.1 90458 1no4A 97 3.58e+01 h.1.24.1 85918 1r44A 202 3.59e+01 d.65.1.4 104787 1v5iB 76 3.60e+01 1siqA 392 3.64e+01 a.29.3.1,e.6.1.1 105585,105586 1w7jA 795 3.87e+01 1fn9A 365 3.94e+01 1fn9A d.196.1.1 59894 1qo7A 394 4.08e+01 1qo7A c.69.1.11 34697 2gk4A 232 4.08e+01 1xk5A 204 4.08e+01 1z8uA 102 4.09e+01 1p4cA 380 4.11e+01 c.1.4.1 94100 1f02T 66 4.12e+01 1f02T j.67.1.1 46360 1yz1A 174 4.15e+01 1exrA 148 4.24e+01 1cll a.39.1.5 17299 1akhA 61 4.27e+01 1akhA a.4.1.1 15980 2fm9A 215 4.31e+01 1k92A 455 4.33e+01 c.26.2.1,d.210.1.1 68325,68326 1sd4A 126 4.45e+01 a.4.5.39 105428 1on2A 142 4.52e+01 a.4.5.24,a.76.1.1 87103,87104 2b1eA 564 4.53e+01 1rz4A 226 4.57e+01 a.4.5.53,a.118.1.18 105131,105132 2bl0C 142 4.62e+01 1u2eA 289 4.65e+01 1kilE 49 4.66e+01 h.1.15.1 72522 1x54A 434 4.69e+01 1qtnA 164 4.73e+01 1pauA c.17.1.1 30999 1fcdA 401 4.75e+01 1fcdA c.3.1.5,c.3.1.5,d.87.1.1 30593,30594,40218 1ockA 412 4.76e+01 c.117.1.1 86802 1m46B 25 4.86e+01 4tmkA 213 4.88e+01 5tmpA c.37.1.1 31930 1j1jA 240 4.93e+01 a.118.16.1 90762 1doi 128 4.96e+01 1awd d.15.4.1 37676 1luaA 287 5.02e+01 c.2.1.7,c.58.1.4 78216,78217 1nz6A 101 5.09e+01 a.2.3.1 86441 2c6qA 351 5.20e+01 1u07A 90 5.23e+01 1g0oA 283 5.27e+01 1ybvA c.2.1.2 60181 1dtc 27 5.28e+01 j.7.1.1 46109 1i58A 189 5.30e+01 1b3qA d.122.1.3 61773 1wqgA 185 5.54e+01 2ck3A 510 5.56e+01 1dekA 241 5.66e+01 1dekA c.37.1.1 31842 1lj2A 110 5.69e+01 h.1.13.2 73926 1zkkA 167 5.73e+01 1u9iA 519 5.76e+01 1ev0A 58 5.95e+01 1ev0A d.71.1.1 39594 1lqaA 346 6.03e+01 c.1.7.1 84674 1fr2A 86 6.09e+01 a.28.2.1 83256 1k1vA 41 6.10e+01 a.37.1.1 71999 1zccA 248 6.20e+01 1gesA 450 6.20e+01 3grs c.3.1.5,c.3.1.5,d.87.1.1 30473,30474,40168 1u8xX 472 6.27e+01 c.2.1.5,d.162.1.2 107741,107742 2czrA 226 6.27e+01 1t7rA 269 6.32e+01 a.123.1.1 106635 1uw4A 91 6.38e+01 d.58.7.4 100071 1y9qA 192 6.44e+01 1uedA 406 6.44e+01 a.104.1.1 99256 1eyhA 144 6.51e+01 1eduA a.118.9.1 19214 1wvqA 167 6.51e+01 2oatA 439 6.56e+01 2dkb c.67.1.4 34452 1gjwA 637 6.60e+01 b.71.1.1,c.1.8.1 60582,60583 1kn1A 160 6.63e+01 a.1.1.3 77455 2f9dP 43 6.64e+01 1h5wA 309 6.65e+01 e.27.1.1 65635 1s9kD 53 6.88e+01 1ql3A 99 6.94e+01 1ycc a.3.1.1 15822 1owfA 99 7.03e+01 a.55.1.1 87487 1xfhA 422 7.04e+01 1yhnB 65 7.05e+01 2ccmA 191 7.08e+01 1cpq 129 7.17e+01 1cpq a.24.3.2 16556 1m33A 258 7.17e+01 c.69.1.26 78514 1dmhA 311 7.20e+01 1dmhA b.3.6.1 22633 6rlxA 24 7.25e+01 2bfdA 400 7.36e+01 1yycA 174 7.36e+01 1flcB 175 7.39e+01 1flcB h.3.1.1 45716 1pi1A 185 7.41e+01 a.29.7.1 94699 1ez3A 127 7.42e+01 1dn1B a.47.2.1 17768 1u96A 69 7.45e+01 1qjtA 99 7.49e+01 1eh2 a.39.1.6 17335 1ydxA 406 7.66e+01 1bj7 156 7.77e+01 1bj7 b.60.1.1 27113 1a41 234 7.80e+01 1a41 d.163.1.2 42174 1qczA 169 7.81e+01 1qczA c.23.8.1 31276 1ukcA 522 7.86e+01 c.69.1.17 107911 2gmfA 127 7.95e+01 2gmfA a.26.1.2 16849 1t5hX 504 8.07e+01 e.23.1.1 106449 1zatA 250 8.07e+01 1uz3A 102 8.08e+01 2hddA 61 8.09e+01 2hddA a.4.1.1 15971 1jboB 172 8.10e+01 a.1.1.3 84151 2fu4A 83 8.12e+01 1x7yA 400 8.13e+01 1n97A 389 8.14e+01 a.104.1.1 80335 1jhgA 101 8.24e+01 1jhgA a.4.12.1 19009 1lvfA 110 8.25e+01 a.47.2.1 74280 1fm4A 159 8.33e+01 1bv1 d.129.3.1 76186 2dc3A 193 8.33e+01 1umdA 367 8.34e+01 c.36.1.11 99599 1cvrA 435 8.35e+01 1cvrA b.1.18.12,c.17.1.2 21949,31006 2c4jA 218 8.37e+01 1rifA 282 8.45e+01 c.37.1.23 97507 1ykiA 217 8.53e+01 1s4iA 175 8.59e+01 1mw9X 592 8.79e+01 e.10.1.1 91480 1wu9A 80 8.81e+01 1jmtB 28 8.82e+01 1l7yA 94 8.89e+01 d.15.1.6 73676 1tr0A 108 8.91e+01 d.58.4.4 107261 2b5dX 528 8.93e+01 1m1cA 680 8.99e+01 e.42.1.1 78395